miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7008 5' -60.6 NC_001875.2 + 11932 0.7 0.449276
Target:  5'- uGCgCGCGGCGC-GCCGAcug-UGCGCg -3'
miRNA:   3'- gCG-GCGCUGCGcCGGCUcagaACGCG- -5'
7008 5' -60.6 NC_001875.2 + 39166 0.73 0.314221
Target:  5'- gGCCGCGAgGCgGGCCGGcGg-UUGCGUg -3'
miRNA:   3'- gCGGCGCUgCG-CCGGCU-CagAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 791 0.73 0.321254
Target:  5'- aGCUGUG-CGCGGCaauuGUUUUGCGCa -3'
miRNA:   3'- gCGGCGCuGCGCCGgcu-CAGAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 36656 0.72 0.343054
Target:  5'- gGCCGCGucgUGCGcGCUGAGcUCgggGCGCg -3'
miRNA:   3'- gCGGCGCu--GCGC-CGGCUC-AGaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 85831 0.72 0.35817
Target:  5'- aGCUGCGugGgCGGCCGAuccugCUguUGUGCa -3'
miRNA:   3'- gCGGCGCugC-GCCGGCUca---GA--ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 98755 0.72 0.380903
Target:  5'- aGCCGCGACG-GcGCCGccaucaaAGUCUggagccGCGCg -3'
miRNA:   3'- gCGGCGCUGCgC-CGGC-------UCAGAa-----CGCG- -5'
7008 5' -60.6 NC_001875.2 + 125082 0.71 0.389775
Target:  5'- aCGCCGCGaauGCGCGGCacaucGUUgcUGCGCg -3'
miRNA:   3'- -GCGGCGC---UGCGCCGgcu--CAGa-ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 128702 0.71 0.414646
Target:  5'- aCGCCGCGucCGCGcagcgggcuucGCCGcccaGGUC-UGCGCg -3'
miRNA:   3'- -GCGGCGCu-GCGC-----------CGGC----UCAGaACGCG- -5'
7008 5' -60.6 NC_001875.2 + 54570 0.71 0.431758
Target:  5'- gCGCCGCG--GCGGCCGcuUCgcccggcgGCGCg -3'
miRNA:   3'- -GCGGCGCugCGCCGGCucAGaa------CGCG- -5'
7008 5' -60.6 NC_001875.2 + 68556 0.73 0.307306
Target:  5'- cCGCCGCGGCgGCGGC--GGUC--GCGCa -3'
miRNA:   3'- -GCGGCGCUG-CGCCGgcUCAGaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 41817 0.73 0.307306
Target:  5'- gCGCCgGCGcCGCGGCC-AGU--UGCGCg -3'
miRNA:   3'- -GCGG-CGCuGCGCCGGcUCAgaACGCG- -5'
7008 5' -60.6 NC_001875.2 + 122132 0.73 0.307306
Target:  5'- gGgCGCGGCGCGGCCGGc----GCGCa -3'
miRNA:   3'- gCgGCGCUGCGCCGGCUcagaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 90704 0.77 0.174892
Target:  5'- gGuuGcCGGCGCGGCCGccGGUCaaGCGCg -3'
miRNA:   3'- gCggC-GCUGCGCCGGC--UCAGaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 115306 0.75 0.230038
Target:  5'- gCGCCGaCGugGCGGCgcauuuucgagaacaCGGGUUUUGCGa -3'
miRNA:   3'- -GCGGC-GCugCGCCG---------------GCUCAGAACGCg -5'
7008 5' -60.6 NC_001875.2 + 96109 0.75 0.2383
Target:  5'- aGCUGacCGACGCGGCCGAG-CUUGUcaucgacGCg -3'
miRNA:   3'- gCGGC--GCUGCGCCGGCUCaGAACG-------CG- -5'
7008 5' -60.6 NC_001875.2 + 42742 0.75 0.241109
Target:  5'- gCGCgGCGACGCGcauggugagcggcgcGCuCGGGUCggccgUGCGCa -3'
miRNA:   3'- -GCGgCGCUGCGC---------------CG-GCUCAGa----ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 92819 0.75 0.250283
Target:  5'- uGCCGCGcCGCGGUCGcaucAGUaagGCGCa -3'
miRNA:   3'- gCGGCGCuGCGCCGGC----UCAgaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 74378 0.73 0.300507
Target:  5'- gGCCGCGGCGCguucaGGCgCGGGUaCUgccugGUGCa -3'
miRNA:   3'- gCGGCGCUGCG-----CCG-GCUCA-GAa----CGCG- -5'
7008 5' -60.6 NC_001875.2 + 29281 0.73 0.307306
Target:  5'- gCGCCgGCGggGCGCGGUCGuguggcguGUCgUGCGCg -3'
miRNA:   3'- -GCGG-CGC--UGCGCCGGCu-------CAGaACGCG- -5'
7008 5' -60.6 NC_001875.2 + 116911 0.73 0.307306
Target:  5'- aGCCGCG-CGCGG-CGGGUg--GCGCa -3'
miRNA:   3'- gCGGCGCuGCGCCgGCUCAgaaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.