miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7008 5' -60.6 NC_001875.2 + 791 0.73 0.321254
Target:  5'- aGCUGUG-CGCGGCaauuGUUUUGCGCa -3'
miRNA:   3'- gCGGCGCuGCGCCGgcu-CAGAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 1027 0.66 0.689773
Target:  5'- aGCgCGUGGCGgGGCCcGAggcgcacagcGUUggGCGCa -3'
miRNA:   3'- gCG-GCGCUGCgCCGG-CU----------CAGaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 3066 0.66 0.670114
Target:  5'- gCGCaGCGGCGC-GCCGgGGUCgcccacgGCGUg -3'
miRNA:   3'- -GCGgCGCUGCGcCGGC-UCAGaa-----CGCG- -5'
7008 5' -60.6 NC_001875.2 + 3102 0.71 0.431758
Target:  5'- gCGCCGgGGCGCGGCuCGcg----GCGCa -3'
miRNA:   3'- -GCGGCgCUGCGCCG-GCucagaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 3650 0.69 0.532493
Target:  5'- aGCCGCuGGCGUGuguGCUGcGcgCUUGCGCg -3'
miRNA:   3'- gCGGCG-CUGCGC---CGGCuCa-GAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 3834 0.66 0.670114
Target:  5'- gCGCaCGcCGGCGCGGCCGcAGcCUccaacaUGUGa -3'
miRNA:   3'- -GCG-GC-GCUGCGCCGGC-UCaGA------ACGCg -5'
7008 5' -60.6 NC_001875.2 + 4381 0.69 0.504979
Target:  5'- uGCCGCGugGCGcGCUGcucaaaucggccaucGUCUUGCu- -3'
miRNA:   3'- gCGGCGCugCGC-CGGCu--------------CAGAACGcg -5'
7008 5' -60.6 NC_001875.2 + 6877 0.72 0.376915
Target:  5'- gCGCgGCGACGCGGucaaacagagcuuucCCGAGaCcaacgUGCGCu -3'
miRNA:   3'- -GCGgCGCUGCGCC---------------GGCUCaGa----ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 7448 0.67 0.609695
Target:  5'- gCGCCggcgauuGCGGCGguguaCGGCCGAuUCU-GCGCc -3'
miRNA:   3'- -GCGG-------CGCUGC-----GCCGGCUcAGAaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 9723 0.69 0.532493
Target:  5'- gCGCCGCGcccgaaGCGUGGCaCGuGUUgaGCGUc -3'
miRNA:   3'- -GCGGCGC------UGCGCCG-GCuCAGaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 10158 0.68 0.600792
Target:  5'- gCGCgGCGugGUGGCCGAcgagaccaccGUCac-CGCc -3'
miRNA:   3'- -GCGgCGCugCGCCGGCU----------CAGaacGCG- -5'
7008 5' -60.6 NC_001875.2 + 10403 0.66 0.71312
Target:  5'- gCGCCGUGGCGCGGCacccgCUgcacuacccaacauuUGgCGCa -3'
miRNA:   3'- -GCGGCGCUGCGCCGgcucaGA---------------AC-GCG- -5'
7008 5' -60.6 NC_001875.2 + 10575 0.68 0.589935
Target:  5'- aGCCGCGGgggcagauuugguUGUGGUgCGAGUCcagGUGCa -3'
miRNA:   3'- gCGGCGCU-------------GCGCCG-GCUCAGaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 10860 0.67 0.63051
Target:  5'- gGUgGaCGACGCgguGGCCGcGUCggugGCGCu -3'
miRNA:   3'- gCGgC-GCUGCG---CCGGCuCAGaa--CGCG- -5'
7008 5' -60.6 NC_001875.2 + 11209 0.67 0.660238
Target:  5'- aCGCCGCgccgGACGagaaGGCCGucaAGUUUaccgaGCGCg -3'
miRNA:   3'- -GCGGCG----CUGCg---CCGGC---UCAGAa----CGCG- -5'
7008 5' -60.6 NC_001875.2 + 11609 0.74 0.28081
Target:  5'- gCGuuGCGGCGUGGCCacgaauGGGUUggcGCGCa -3'
miRNA:   3'- -GCggCGCUGCGCCGG------CUCAGaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 11932 0.7 0.449276
Target:  5'- uGCgCGCGGCGC-GCCGAcug-UGCGCg -3'
miRNA:   3'- gCG-GCGCUGCGcCGGCUcagaACGCG- -5'
7008 5' -60.6 NC_001875.2 + 12132 0.67 0.63051
Target:  5'- --gCGCGGCGCGGaaGAGccCgaGCGCa -3'
miRNA:   3'- gcgGCGCUGCGCCggCUCa-GaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 12417 0.68 0.5615
Target:  5'- uGCCGCG-CGCcaagcaGGCCGuugCgUGCGCg -3'
miRNA:   3'- gCGGCGCuGCG------CCGGCucaGaACGCG- -5'
7008 5' -60.6 NC_001875.2 + 12676 0.68 0.59092
Target:  5'- gCGCCGCGu--UGGCCGGGUgUgGCGg -3'
miRNA:   3'- -GCGGCGCugcGCCGGCUCAgAaCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.