miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7008 5' -60.6 NC_001875.2 + 111985 1.11 0.000724
Target:  5'- gCGCCGCGACGCGGCCGAGUCUUGCGCg -3'
miRNA:   3'- -GCGGCGCUGCGCCGGCUCAGAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 120747 0.78 0.158515
Target:  5'- gCGCCGaGACGgGGCCGuGUCcaggGCGCg -3'
miRNA:   3'- -GCGGCgCUGCgCCGGCuCAGaa--CGCG- -5'
7008 5' -60.6 NC_001875.2 + 90704 0.77 0.174892
Target:  5'- gGuuGcCGGCGCGGCCGccGGUCaaGCGCg -3'
miRNA:   3'- gCggC-GCUGCGCCGGC--UCAGaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 100992 0.77 0.188147
Target:  5'- gGCCGCGGCguuuGCGGC--GGUUUUGCGCa -3'
miRNA:   3'- gCGGCGCUG----CGCCGgcUCAGAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 60209 0.77 0.192758
Target:  5'- gCGCCgGCGGCagauugaaGCGGCCGAG-CUcGCGCu -3'
miRNA:   3'- -GCGG-CGCUG--------CGCCGGCUCaGAaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 84172 0.76 0.196993
Target:  5'- gCGgCGCGcCGCGGCCGcGUCcgugcguUUGCGCa -3'
miRNA:   3'- -GCgGCGCuGCGCCGGCuCAG-------AACGCG- -5'
7008 5' -60.6 NC_001875.2 + 115306 0.75 0.230038
Target:  5'- gCGCCGaCGugGCGGCgcauuuucgagaacaCGGGUUUUGCGa -3'
miRNA:   3'- -GCGGC-GCugCGCCG---------------GCUCAGAACGCg -5'
7008 5' -60.6 NC_001875.2 + 96109 0.75 0.2383
Target:  5'- aGCUGacCGACGCGGCCGAG-CUUGUcaucgacGCg -3'
miRNA:   3'- gCGGC--GCUGCGCCGGCUCaGAACG-------CG- -5'
7008 5' -60.6 NC_001875.2 + 42742 0.75 0.241109
Target:  5'- gCGCgGCGACGCGcauggugagcggcgcGCuCGGGUCggccgUGCGCa -3'
miRNA:   3'- -GCGgCGCUGCGC---------------CG-GCUCAGa----ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 50477 0.75 0.244516
Target:  5'- aGgaGCGACGCGGCCGGcgcgUGCGCg -3'
miRNA:   3'- gCggCGCUGCGCCGGCUcagaACGCG- -5'
7008 5' -60.6 NC_001875.2 + 92819 0.75 0.250283
Target:  5'- uGCCGCGcCGCGGUCGcaucAGUaagGCGCa -3'
miRNA:   3'- gCGGCGCuGCGCCGGC----UCAgaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 43603 0.75 0.256161
Target:  5'- aGCgGCGGCGCGcGCCG---CUUGCGCc -3'
miRNA:   3'- gCGgCGCUGCGC-CGGCucaGAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 59582 0.75 0.256161
Target:  5'- gCGCUGCaGCGUGGCCGAcg--UGCGCg -3'
miRNA:   3'- -GCGGCGcUGCGCCGGCUcagaACGCG- -5'
7008 5' -60.6 NC_001875.2 + 90001 0.75 0.256755
Target:  5'- cCGCCGCGGCGCGGCaacuggacGCGCa -3'
miRNA:   3'- -GCGGCGCUGCGCCGgcucagaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 22839 0.74 0.262152
Target:  5'- uCGCCGCGaagcguuuGCGCGaCCGAGUUgaUUGCGUc -3'
miRNA:   3'- -GCGGCGC--------UGCGCcGGCUCAG--AACGCG- -5'
7008 5' -60.6 NC_001875.2 + 19865 0.74 0.274476
Target:  5'- gGCCGCGuCGCGGCgCGGGcgccgUUUGCGa -3'
miRNA:   3'- gCGGCGCuGCGCCG-GCUCa----GAACGCg -5'
7008 5' -60.6 NC_001875.2 + 11609 0.74 0.28081
Target:  5'- gCGuuGCGGCGUGGCCacgaauGGGUUggcGCGCa -3'
miRNA:   3'- -GCggCGCUGCGCCGG------CUCAGaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 61605 0.74 0.28726
Target:  5'- gCGCCgGCGGCGCuucgGGCUGuGUCggcgGCGCc -3'
miRNA:   3'- -GCGG-CGCUGCG----CCGGCuCAGaa--CGCG- -5'
7008 5' -60.6 NC_001875.2 + 112396 0.73 0.29849
Target:  5'- uCGCaguuaaaGCGGCGCGGCCGcagcacaaugcgguAGUCguuguUUGCGCc -3'
miRNA:   3'- -GCGg------CGCUGCGCCGGC--------------UCAG-----AACGCG- -5'
7008 5' -60.6 NC_001875.2 + 74378 0.73 0.300507
Target:  5'- gGCCGCGGCGCguucaGGCgCGGGUaCUgccugGUGCa -3'
miRNA:   3'- gCGGCGCUGCG-----CCG-GCUCA-GAa----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.