miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7009 3' -57.1 NC_001875.2 + 27142 0.66 0.825926
Target:  5'- --cUGUUuagcUCGUCCAGCuuggucGCCGCugCGu -3'
miRNA:   3'- cauGCAA----AGCGGGUCGu-----CGGCGugGC- -5'
7009 3' -57.1 NC_001875.2 + 10333 0.66 0.80767
Target:  5'- --cUGUUUCGCCCcGC-GCCcgugauucaaauuGCGCCGg -3'
miRNA:   3'- cauGCAAAGCGGGuCGuCGG-------------CGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 84193 0.66 0.817326
Target:  5'- nGUGCGUUUgCGCaaCAGCugccgguaguagGGCCGCGCgCGc -3'
miRNA:   3'- -CAUGCAAA-GCGg-GUCG------------UCGGCGUG-GC- -5'
7009 3' -57.1 NC_001875.2 + 37881 0.66 0.834348
Target:  5'- -gGCGggcCGCgCCAGCGGCUugcuggcgcgGCACUGg -3'
miRNA:   3'- caUGCaaaGCG-GGUCGUCGG----------CGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 94604 0.66 0.834348
Target:  5'- aUACGgcggUUCGCUgagcugCAGCGGCgGCACa- -3'
miRNA:   3'- cAUGCa---AAGCGG------GUCGUCGgCGUGgc -5'
7009 3' -57.1 NC_001875.2 + 52510 0.66 0.842584
Target:  5'- -aGCGg--CGCCaaaGGCAgcGCCGCGCUc -3'
miRNA:   3'- caUGCaaaGCGGg--UCGU--CGGCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 88235 0.66 0.842584
Target:  5'- -aACGg--CGCa-AGCGGCgCGCGCCGc -3'
miRNA:   3'- caUGCaaaGCGggUCGUCG-GCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 91598 0.66 0.805002
Target:  5'- -aGCGUUUCuugcacaCCCGGCucuugggcaauuuGCUGCGCCGa -3'
miRNA:   3'- caUGCAAAGc------GGGUCGu------------CGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 26487 0.66 0.842584
Target:  5'- cGUAguUUUCGCaauaGGCGGCCGCGuuGa -3'
miRNA:   3'- -CAUgcAAAGCGgg--UCGUCGGCGUggC- -5'
7009 3' -57.1 NC_001875.2 + 129006 0.66 0.812084
Target:  5'- -aACuaUUCGCCCAGCuacucgccaacgucGCCGCGCUc -3'
miRNA:   3'- caUGcaAAGCGGGUCGu-------------CGGCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 79898 0.66 0.808556
Target:  5'- -cACGUcgCGCCCaaaguAGC-GCCGCACg- -3'
miRNA:   3'- caUGCAaaGCGGG-----UCGuCGGCGUGgc -5'
7009 3' -57.1 NC_001875.2 + 31590 0.66 0.842584
Target:  5'- -aGgGUggUGUCCGGC-GCCGUGCCGu -3'
miRNA:   3'- caUgCAaaGCGGGUCGuCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 109910 0.66 0.842584
Target:  5'- -aACGUUUaaCGCCCcgcuuAGCcauGCaCGCGCCGc -3'
miRNA:   3'- caUGCAAA--GCGGG-----UCGu--CG-GCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 113712 0.66 0.842584
Target:  5'- -gAUGgugUCGCCCAGCacaaAGCCGaugagcgacuccCACCa -3'
miRNA:   3'- caUGCaa-AGCGGGUCG----UCGGC------------GUGGc -5'
7009 3' -57.1 NC_001875.2 + 98634 0.66 0.825926
Target:  5'- -cGCGUguuuuUUC-CCCGGCgagGGCCGCugCa -3'
miRNA:   3'- caUGCA-----AAGcGGGUCG---UCGGCGugGc -5'
7009 3' -57.1 NC_001875.2 + 55123 0.66 0.825926
Target:  5'- -cGCGUcaccgaCGCUCAGCgcgaccgacGGCgGCACCGg -3'
miRNA:   3'- caUGCAaa----GCGGGUCG---------UCGgCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 113684 0.66 0.850626
Target:  5'- -gGCGgcgUCGCgC-GC-GCCGCACCa -3'
miRNA:   3'- caUGCaa-AGCGgGuCGuCGGCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 40192 0.66 0.842584
Target:  5'- cGUACGcgUaCGgCCAGCuGCUGCGCgGc -3'
miRNA:   3'- -CAUGCaaA-GCgGGUCGuCGGCGUGgC- -5'
7009 3' -57.1 NC_001875.2 + 87295 0.66 0.850626
Target:  5'- -aAUGca--GCCCGGCAcGCCGCGCg- -3'
miRNA:   3'- caUGCaaagCGGGUCGU-CGGCGUGgc -5'
7009 3' -57.1 NC_001875.2 + 88918 0.66 0.808556
Target:  5'- -cACGUUUgacugcgaCGCCCAcggcauGCGGCUGCACa- -3'
miRNA:   3'- caUGCAAA--------GCGGGU------CGUCGGCGUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.