miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7009 3' -57.1 NC_001875.2 + 42438 0.69 0.662668
Target:  5'- -cACGcaaaCGCCugcguCAGCGGCCGCugCGg -3'
miRNA:   3'- caUGCaaa-GCGG-----GUCGUCGGCGugGC- -5'
7009 3' -57.1 NC_001875.2 + 18480 0.71 0.550169
Target:  5'- uUGCGccgCGCCgCAgcgacGCAGCCGCGCCc -3'
miRNA:   3'- cAUGCaaaGCGG-GU-----CGUCGGCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 36813 0.71 0.570377
Target:  5'- -cGCGUUacgCGCCgCGGCAGUugCGCGCCc -3'
miRNA:   3'- caUGCAAa--GCGG-GUCGUCG--GCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 84306 0.71 0.570377
Target:  5'- aUGCG---CGCCUAGUAGCgGCGCCu -3'
miRNA:   3'- cAUGCaaaGCGGGUCGUCGgCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 75133 0.71 0.570377
Target:  5'- cGUACGUUUCGCgCGGCcucGGCCa-ACCGu -3'
miRNA:   3'- -CAUGCAAAGCGgGUCG---UCGGcgUGGC- -5'
7009 3' -57.1 NC_001875.2 + 37110 0.7 0.611266
Target:  5'- uGUGCGg---GCgCGGC-GCCGCGCCGg -3'
miRNA:   3'- -CAUGCaaagCGgGUCGuCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 99407 0.7 0.621546
Target:  5'- -aGCGggUCGCgCAGCgcauuguuGGCCaGCGCCGc -3'
miRNA:   3'- caUGCaaAGCGgGUCG--------UCGG-CGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 42948 0.7 0.631835
Target:  5'- cGUGCGUcagcaGCCCGcGCAGC-GCGCCa -3'
miRNA:   3'- -CAUGCAaag--CGGGU-CGUCGgCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 99361 0.69 0.651376
Target:  5'- cUugGgcgCGCCCgccaaguggccaaAGC-GCCGCACCGg -3'
miRNA:   3'- cAugCaaaGCGGG-------------UCGuCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 16272 0.71 0.550169
Target:  5'- -cACGUggUGCCCGGCGaCCGCACg- -3'
miRNA:   3'- caUGCAaaGCGGGUCGUcGGCGUGgc -5'
7009 3' -57.1 NC_001875.2 + 45460 0.71 0.540147
Target:  5'- -gGCGcucggCGCCC-GCAGCCGCGCg- -3'
miRNA:   3'- caUGCaaa--GCGGGuCGUCGGCGUGgc -5'
7009 3' -57.1 NC_001875.2 + 6482 0.71 0.520295
Target:  5'- uUACGg--CGCCCAacGCGgaguGCCGCGCCa -3'
miRNA:   3'- cAUGCaaaGCGGGU--CGU----CGGCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 111964 0.77 0.259287
Target:  5'- -cGCGUUUCGCaaaCGGCGcCCGCGCCGc -3'
miRNA:   3'- caUGCAAAGCGg--GUCGUcGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 33328 0.75 0.3352
Target:  5'- -gGCGUUgccaagggucgUCGCCCGGCAGCCaaucacGCACgCGg -3'
miRNA:   3'- caUGCAA-----------AGCGGGUCGUCGG------CGUG-GC- -5'
7009 3' -57.1 NC_001875.2 + 54577 0.75 0.350634
Target:  5'- -gGCGgccgcUUCGCCCGGCGGC-GCGCCc -3'
miRNA:   3'- caUGCa----AAGCGGGUCGUCGgCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 41834 0.73 0.435099
Target:  5'- ---aGUUgcgCGUCCAGUuGCCGCGCCGc -3'
miRNA:   3'- caugCAAa--GCGGGUCGuCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 74811 0.73 0.438717
Target:  5'- aGUACGacgCGCCCAGCGGCgCGUuacacuccauugacgGCCGc -3'
miRNA:   3'- -CAUGCaaaGCGGGUCGUCG-GCG---------------UGGC- -5'
7009 3' -57.1 NC_001875.2 + 36393 0.73 0.444176
Target:  5'- -aACGUUUCGUCUuGcCAGCCGCGCaCGc -3'
miRNA:   3'- caUGCAAAGCGGGuC-GUCGGCGUG-GC- -5'
7009 3' -57.1 NC_001875.2 + 44010 0.73 0.453359
Target:  5'- -gGCGccgUGCCCAGCGuGCUGUACCGc -3'
miRNA:   3'- caUGCaaaGCGGGUCGU-CGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 32776 0.72 0.491078
Target:  5'- -cGCGUccUCGCgCGGCGugggcgggcGCCGCGCCGg -3'
miRNA:   3'- caUGCAa-AGCGgGUCGU---------CGGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.