miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7009 3' -57.1 NC_001875.2 + 113165 1.08 0.002244
Target:  5'- uGUACGUUUCGCCCAGCAGCCGCACCGu -3'
miRNA:   3'- -CAUGCAAAGCGGGUCGUCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 98320 0.84 0.098493
Target:  5'- ---gGUUUCGCCCGGCaAGCCGCGCUGc -3'
miRNA:   3'- caugCAAAGCGGGUCG-UCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 41122 0.8 0.183633
Target:  5'- -cACGUcgugUCGCgcuugaCCGGCGGCCGCGCCGg -3'
miRNA:   3'- caUGCAa---AGCG------GGUCGUCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 111964 0.77 0.259287
Target:  5'- -cGCGUUUCGCaaaCGGCGcCCGCGCCGc -3'
miRNA:   3'- caUGCAAAGCGg--GUCGUcGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 33328 0.75 0.3352
Target:  5'- -gGCGUUgccaagggucgUCGCCCGGCAGCCaaucacGCACgCGg -3'
miRNA:   3'- caUGCAA-----------AGCGGGUCGUCGG------CGUG-GC- -5'
7009 3' -57.1 NC_001875.2 + 89384 0.75 0.3352
Target:  5'- cUGCGUggcUCGCCgCAGCGGCCGCugaCGc -3'
miRNA:   3'- cAUGCAa--AGCGG-GUCGUCGGCGug-GC- -5'
7009 3' -57.1 NC_001875.2 + 54577 0.75 0.350634
Target:  5'- -gGCGgccgcUUCGCCCGGCGGC-GCGCCc -3'
miRNA:   3'- caUGCa----AAGCGGGUCGUCGgCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 38554 0.74 0.399896
Target:  5'- cGUAgGUUUUGCCCAacccGUGGCCGC-CCGc -3'
miRNA:   3'- -CAUgCAAAGCGGGU----CGUCGGCGuGGC- -5'
7009 3' -57.1 NC_001875.2 + 95246 0.74 0.408526
Target:  5'- -gGCGa--CGCgCAGCGGCUGCGCCGc -3'
miRNA:   3'- caUGCaaaGCGgGUCGUCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 98617 0.73 0.417271
Target:  5'- -aACGg--CGCCCGGCgAGcCCGCGCCc -3'
miRNA:   3'- caUGCaaaGCGGGUCG-UC-GGCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 41834 0.73 0.435099
Target:  5'- ---aGUUgcgCGUCCAGUuGCCGCGCCGc -3'
miRNA:   3'- caugCAAa--GCGGGUCGuCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 74811 0.73 0.438717
Target:  5'- aGUACGacgCGCCCAGCGGCgCGUuacacuccauugacgGCCGc -3'
miRNA:   3'- -CAUGCaaaGCGGGUCGUCG-GCG---------------UGGC- -5'
7009 3' -57.1 NC_001875.2 + 36393 0.73 0.444176
Target:  5'- -aACGUUUCGUCUuGcCAGCCGCGCaCGc -3'
miRNA:   3'- caUGCAAAGCGGGuC-GUCGGCGUG-GC- -5'
7009 3' -57.1 NC_001875.2 + 19900 0.73 0.444176
Target:  5'- cGUGCGcUUuuagcugcUCGUaCGGCAGCUGCACCGg -3'
miRNA:   3'- -CAUGC-AA--------AGCGgGUCGUCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 44010 0.73 0.453359
Target:  5'- -gGCGccgUGCCCAGCGuGCUGUACCGc -3'
miRNA:   3'- caUGCaaaGCGGGUCGU-CGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 28525 0.73 0.462644
Target:  5'- -cACGcgUCGCCCGGCAcGCCGguCAUCGa -3'
miRNA:   3'- caUGCaaAGCGGGUCGU-CGGC--GUGGC- -5'
7009 3' -57.1 NC_001875.2 + 127987 0.72 0.472028
Target:  5'- -gGCGgaUCGUCaCAuguuggaggcuGCGGCCGCGCCGg -3'
miRNA:   3'- caUGCaaAGCGG-GU-----------CGUCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 60686 0.72 0.491078
Target:  5'- -gGCaGUUUCuguaauGCCCAacGCGGCCGCGCUGa -3'
miRNA:   3'- caUG-CAAAG------CGGGU--CGUCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 32776 0.72 0.491078
Target:  5'- -cGCGUccUCGCgCGGCGugggcgggcGCCGCGCCGg -3'
miRNA:   3'- caUGCAa-AGCGgGUCGU---------CGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 9034 0.72 0.500735
Target:  5'- uUGCGUUUgGagCCGcCGGCCGCGCCGg -3'
miRNA:   3'- cAUGCAAAgCg-GGUcGUCGGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.