miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7009 3' -57.1 NC_001875.2 + 320 0.67 0.79054
Target:  5'- uUGCGc--CGCuuCCAGCcGCUGCACCGc -3'
miRNA:   3'- cAUGCaaaGCG--GGUCGuCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 2876 0.67 0.781311
Target:  5'- -cGCGUcauccgcUCGCCCAGCucacgccuuAGCCGCucguGCCu -3'
miRNA:   3'- caUGCAa------AGCGGGUCG---------UCGGCG----UGGc -5'
7009 3' -57.1 NC_001875.2 + 3014 0.66 0.850626
Target:  5'- aGUGCGcgUCGCCguGCAaGuuGUACaCGc -3'
miRNA:   3'- -CAUGCaaAGCGGguCGU-CggCGUG-GC- -5'
7009 3' -57.1 NC_001875.2 + 3054 0.69 0.672907
Target:  5'- -cGCGUaagaggCGCgCAGCGG-CGCGCCGg -3'
miRNA:   3'- caUGCAaa----GCGgGUCGUCgGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 3081 0.69 0.693276
Target:  5'- ---gGggUCGCCCacGGCGuGCaCGCGCCGg -3'
miRNA:   3'- caugCaaAGCGGG--UCGU-CG-GCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 3173 0.66 0.850626
Target:  5'- aGUAgGUga-G-CCGGCGGCCGCGCa- -3'
miRNA:   3'- -CAUgCAaagCgGGUCGUCGGCGUGgc -5'
7009 3' -57.1 NC_001875.2 + 6482 0.71 0.520295
Target:  5'- uUACGg--CGCCCAacGCGgaguGCCGCGCCa -3'
miRNA:   3'- cAUGCaaaGCGGGU--CGU----CGGCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 8083 0.66 0.850626
Target:  5'- -cGCGUUgUUGUCgCGaCGGCCGUACCGa -3'
miRNA:   3'- caUGCAA-AGCGG-GUcGUCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 9034 0.72 0.500735
Target:  5'- uUGCGUUUgGagCCGcCGGCCGCGCCGg -3'
miRNA:   3'- cAUGCAAAgCg-GGUcGUCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 9693 0.66 0.842584
Target:  5'- cGUugGggcUCGCCgucguGCgcgccGGCCGCGCCGc -3'
miRNA:   3'- -CAugCaa-AGCGGgu---CG-----UCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 10333 0.66 0.80767
Target:  5'- --cUGUUUCGCCCcGC-GCCcgugauucaaauuGCGCCGg -3'
miRNA:   3'- cauGCAAAGCGGGuCGuCGG-------------CGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 12068 0.71 0.520295
Target:  5'- -aGCGUacacgUCGCCCGuCAGaCGCACCGg -3'
miRNA:   3'- caUGCAa----AGCGGGUcGUCgGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 13014 0.67 0.762456
Target:  5'- cGUACGcUUCGCgCGGCAGCuuugcaaaaagCGCGCa- -3'
miRNA:   3'- -CAUGCaAAGCGgGUCGUCG-----------GCGUGgc -5'
7009 3' -57.1 NC_001875.2 + 13799 0.67 0.799624
Target:  5'- cGUGCGggUgGCgCGGCGuugccGUCGCACUGg -3'
miRNA:   3'- -CAUGCaaAgCGgGUCGU-----CGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 14506 0.72 0.510476
Target:  5'- --cCGgUUCGCCC-GC-GCCGCGCCGu -3'
miRNA:   3'- cauGCaAAGCGGGuCGuCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 16272 0.71 0.550169
Target:  5'- -cACGUggUGCCCGGCGaCCGCACg- -3'
miRNA:   3'- caUGCAaaGCGGGUCGUcGGCGUGgc -5'
7009 3' -57.1 NC_001875.2 + 17950 0.69 0.683113
Target:  5'- ---aGUUUuugUGCCCGGCAGCCaGCGCg- -3'
miRNA:   3'- caugCAAA---GCGGGUCGUCGG-CGUGgc -5'
7009 3' -57.1 NC_001875.2 + 18480 0.71 0.550169
Target:  5'- uUGCGccgCGCCgCAgcgacGCAGCCGCGCCc -3'
miRNA:   3'- cAUGCaaaGCGG-GU-----CGUCGGCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 19900 0.73 0.444176
Target:  5'- cGUGCGcUUuuagcugcUCGUaCGGCAGCUGCACCGg -3'
miRNA:   3'- -CAUGC-AA--------AGCGgGUCGUCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 20923 0.67 0.781311
Target:  5'- --cCGUUUCcCCCucGCAGCCugaGCACCa -3'
miRNA:   3'- cauGCAAAGcGGGu-CGUCGG---CGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.