miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 3' -54 NC_001875.2 + 50036 0.66 0.942621
Target:  5'- gCGGCGAGGCGGcCGGCcCGUCGc--- -3'
miRNA:   3'- gGUCGCUUUGCUcGUCG-GCGGCaauu -5'
7011 3' -54 NC_001875.2 + 48870 0.66 0.937795
Target:  5'- aUCAGCGAG--GGGuCGGUCGCCGa--- -3'
miRNA:   3'- -GGUCGCUUugCUC-GUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 98889 0.66 0.937795
Target:  5'- aCgGGCGAcauGGCGAGCGGCgCGCa----- -3'
miRNA:   3'- -GgUCGCU---UUGCUCGUCG-GCGgcaauu -5'
7011 3' -54 NC_001875.2 + 85189 0.66 0.937795
Target:  5'- -gAGCGAguaguacugGAUGAGCcgacgGGCCGCCGc--- -3'
miRNA:   3'- ggUCGCU---------UUGCUCG-----UCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 113084 0.66 0.937795
Target:  5'- -uGGCGAcGCGcgucAGCgccuuAGCCGCCGUg-- -3'
miRNA:   3'- ggUCGCUuUGC----UCG-----UCGGCGGCAauu -5'
7011 3' -54 NC_001875.2 + 32989 0.66 0.937795
Target:  5'- aCGGUGuuGCGcucGCGGUCGuuGUUGAa -3'
miRNA:   3'- gGUCGCuuUGCu--CGUCGGCggCAAUU- -5'
7011 3' -54 NC_001875.2 + 93947 0.66 0.937795
Target:  5'- gCCAGUGccGCGccAGCaAGCCGCUGg--- -3'
miRNA:   3'- -GGUCGCuuUGC--UCG-UCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 88978 0.66 0.932718
Target:  5'- gCUGGCGGAccuGCGccuGCGGCgCGCCGg--- -3'
miRNA:   3'- -GGUCGCUU---UGCu--CGUCG-GCGGCaauu -5'
7011 3' -54 NC_001875.2 + 23259 0.66 0.932718
Target:  5'- aCAGCGA--CGGGCAGCgcagCGCCa---- -3'
miRNA:   3'- gGUCGCUuuGCUCGUCG----GCGGcaauu -5'
7011 3' -54 NC_001875.2 + 65511 0.66 0.932718
Target:  5'- gCGGCGuuucuuACG-GCGGCCGCCc---- -3'
miRNA:   3'- gGUCGCuu----UGCuCGUCGGCGGcaauu -5'
7011 3' -54 NC_001875.2 + 121139 0.66 0.932718
Target:  5'- gUCGGCGuu-CGAGCGGggcguCCaGCCGUUGc -3'
miRNA:   3'- -GGUCGCuuuGCUCGUC-----GG-CGGCAAUu -5'
7011 3' -54 NC_001875.2 + 21330 0.66 0.932197
Target:  5'- --cGCGGggcccgccuuguuGACGAGCAGC-GCCGUg-- -3'
miRNA:   3'- gguCGCU-------------UUGCUCGUCGgCGGCAauu -5'
7011 3' -54 NC_001875.2 + 70601 0.66 0.92955
Target:  5'- aCAGCaaauGCGAcGCGGCCauagacgaaaacgugGCCGUUAAa -3'
miRNA:   3'- gGUCGcuu-UGCU-CGUCGG---------------CGGCAAUU- -5'
7011 3' -54 NC_001875.2 + 108939 0.66 0.927387
Target:  5'- aCGGCGuuGCGcAGCAggauGCgGCCGUg-- -3'
miRNA:   3'- gGUCGCuuUGC-UCGU----CGgCGGCAauu -5'
7011 3' -54 NC_001875.2 + 14521 0.66 0.927387
Target:  5'- gUCGGgGGAacuugGCGGGCAcGCCGCUuguGUUGAa -3'
miRNA:   3'- -GGUCgCUU-----UGCUCGU-CGGCGG---CAAUU- -5'
7011 3' -54 NC_001875.2 + 53547 0.66 0.927387
Target:  5'- aCCAGCGcgagccgcAAACGGGCuuGgUGCCGUa-- -3'
miRNA:   3'- -GGUCGC--------UUUGCUCGu-CgGCGGCAauu -5'
7011 3' -54 NC_001875.2 + 63724 0.66 0.927387
Target:  5'- gCGGCGAcGGCGGGCGcuucGCCGgCGUc-- -3'
miRNA:   3'- gGUCGCU-UUGCUCGU----CGGCgGCAauu -5'
7011 3' -54 NC_001875.2 + 86906 0.66 0.92684
Target:  5'- gCCGGCGaAAACGAgGCGcugaagcGCCGCCu---- -3'
miRNA:   3'- -GGUCGC-UUUGCU-CGU-------CGGCGGcaauu -5'
7011 3' -54 NC_001875.2 + 7250 0.66 0.925184
Target:  5'- gCAGCGGGuuuaacuACGAGCAggagcaaacgguguGCCGCCa---- -3'
miRNA:   3'- gGUCGCUU-------UGCUCGU--------------CGGCGGcaauu -5'
7011 3' -54 NC_001875.2 + 100145 0.66 0.921803
Target:  5'- gCCGGCGgcGCGcaAGCGGCgguccaCGCCGg--- -3'
miRNA:   3'- -GGUCGCuuUGC--UCGUCG------GCGGCaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.