miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 3' -52.6 NC_001875.2 + 91181 0.74 0.572453
Target:  5'- -cACAGCGGCGCuuGCGUGuuGuuGGUCg -3'
miRNA:   3'- aaUGUCGCUGUGu-UGUACu-CggCCAG- -5'
7020 3' -52.6 NC_001875.2 + 59585 0.67 0.924397
Target:  5'- cUGCAGCGugGcCGACGUgcgcGAGCaCGGg- -3'
miRNA:   3'- aAUGUCGCugU-GUUGUA----CUCG-GCCag -5'
7020 3' -52.6 NC_001875.2 + 59891 0.67 0.929975
Target:  5'- -cGCGGCGACAgGcugcGCGcgGAGCgcgCGGUCa -3'
miRNA:   3'- aaUGUCGCUGUgU----UGUa-CUCG---GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 3165 0.66 0.96173
Target:  5'- ---gGGCGGCGaguAgGUGAGCCGG-Cg -3'
miRNA:   3'- aaugUCGCUGUgu-UgUACUCGGCCaG- -5'
7020 3' -52.6 NC_001875.2 + 33277 0.71 0.74252
Target:  5'- -gACGGCGGCAgCAGCGcguucuUGAGCaCGGUg -3'
miRNA:   3'- aaUGUCGCUGU-GUUGU------ACUCG-GCCAg -5'
7020 3' -52.6 NC_001875.2 + 94760 0.71 0.759729
Target:  5'- -cGCGGCGgugucguccgccaaACACAGCGUG-GCCGcGUCc -3'
miRNA:   3'- aaUGUCGC--------------UGUGUUGUACuCGGC-CAG- -5'
7020 3' -52.6 NC_001875.2 + 91351 0.7 0.809909
Target:  5'- gUACAGCGugccguuGCGCGACAUGAcGcCCGG-Ca -3'
miRNA:   3'- aAUGUCGC-------UGUGUUGUACU-C-GGCCaG- -5'
7020 3' -52.6 NC_001875.2 + 129554 0.69 0.868089
Target:  5'- -cACGGCgGGC-CGGCGUuuuguaauuguaucGAGCCGGUCc -3'
miRNA:   3'- aaUGUCG-CUGuGUUGUA--------------CUCGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 3067 0.68 0.908658
Target:  5'- -cGCAGCGGCGCGccggggucgcccacgGCGUGcacgcGCCGGg- -3'
miRNA:   3'- aaUGUCGCUGUGU---------------UGUACu----CGGCCag -5'
7020 3' -52.6 NC_001875.2 + 31981 0.67 0.924397
Target:  5'- -aACAGCGuCGCGuugAUGAGgCCGGUg -3'
miRNA:   3'- aaUGUCGCuGUGUug-UACUC-GGCCAg -5'
7020 3' -52.6 NC_001875.2 + 89810 0.67 0.918554
Target:  5'- -cGCgGGCGGCAgAuCGUGGuGCCGGUUa -3'
miRNA:   3'- aaUG-UCGCUGUgUuGUACU-CGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 19948 0.68 0.892569
Target:  5'- -aGCGGcCGGCGCGACGguccGGCCGG-Cg -3'
miRNA:   3'- aaUGUC-GCUGUGUUGUac--UCGGCCaG- -5'
7020 3' -52.6 NC_001875.2 + 73704 0.73 0.658265
Target:  5'- cUGCGGCGGCuGCGGCuguugGGGuuGGUCg -3'
miRNA:   3'- aAUGUCGCUG-UGUUGua---CUCggCCAG- -5'
7020 3' -52.6 NC_001875.2 + 130016 0.67 0.918554
Target:  5'- -gGCGGCGGCgGCGGCAUGcuCgUGGUCa -3'
miRNA:   3'- aaUGUCGCUG-UGUUGUACucG-GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 93116 0.72 0.720841
Target:  5'- -cAguGCGGCucCAGCAUGAugaugugguugccGCCGGUCa -3'
miRNA:   3'- aaUguCGCUGu-GUUGUACU-------------CGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 63022 0.68 0.885433
Target:  5'- -gGCAGCGcaaAUACAGCGUGGGauGGUg -3'
miRNA:   3'- aaUGUCGC---UGUGUUGUACUCggCCAg -5'
7020 3' -52.6 NC_001875.2 + 130064 0.67 0.918554
Target:  5'- -gGCGGCGGCgGCGGCAUGcuCgUGGUCa -3'
miRNA:   3'- aaUGUCGCUG-UGUUGUACucG-GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 81009 0.67 0.924397
Target:  5'- -gGCGcGCGACGCGuuGCu---GCCGGUCu -3'
miRNA:   3'- aaUGU-CGCUGUGU--UGuacuCGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 41464 0.71 0.739449
Target:  5'- gUUGCGGCGcGCGCGGCGugucuuguguggucUGcgccGGCCGGUCg -3'
miRNA:   3'- -AAUGUCGC-UGUGUUGU--------------AC----UCGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 124748 0.7 0.792058
Target:  5'- -gGCAGCGcGCGCuGCAUGucugcgcacaGGCCGGUg -3'
miRNA:   3'- aaUGUCGC-UGUGuUGUAC----------UCGGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.