miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7022 3' -58.1 NC_001875.2 + 92489 0.66 0.812295
Target:  5'- cGAG-ACGGcGgGCGuCAgcGUCAGGCUg -3'
miRNA:   3'- aCUCgUGCCaCgCGCuGU--CAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 79291 0.66 0.812295
Target:  5'- aUGcGCAUGuUGCGCGAcCAGUUugcuGGUCg -3'
miRNA:   3'- -ACuCGUGCcACGCGCU-GUCAGu---CCGG- -5'
7022 3' -58.1 NC_001875.2 + 21693 0.66 0.812295
Target:  5'- cGAGCgcgacGCGGUGCuGCGguccagccGCAG-CAGGUUc -3'
miRNA:   3'- aCUCG-----UGCCACG-CGC--------UGUCaGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 1057 0.66 0.803519
Target:  5'- uUGGGCGCaacguuGGcgacCGCG-CGGUCAGGCUc -3'
miRNA:   3'- -ACUCGUG------CCac--GCGCuGUCAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 67156 0.66 0.794589
Target:  5'- cUGucuGCGCGGgacaGCGUGguggacaccGCGGUCGGGUa -3'
miRNA:   3'- -ACu--CGUGCCa---CGCGC---------UGUCAGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 36586 0.66 0.794589
Target:  5'- cGAGCuuguauCGGcGCGUGuACGGUUAGcGCUc -3'
miRNA:   3'- aCUCGu-----GCCaCGCGC-UGUCAGUC-CGG- -5'
7022 3' -58.1 NC_001875.2 + 56462 0.66 0.794589
Target:  5'- -uGGCGgGGUccgcGCGCGuguUGGUCAGcGCCa -3'
miRNA:   3'- acUCGUgCCA----CGCGCu--GUCAGUC-CGG- -5'
7022 3' -58.1 NC_001875.2 + 61551 0.66 0.794589
Target:  5'- gUGGGaCACGGUGCGUuGGCAGgu--GCUg -3'
miRNA:   3'- -ACUC-GUGCCACGCG-CUGUCagucCGG- -5'
7022 3' -58.1 NC_001875.2 + 99909 0.66 0.793687
Target:  5'- cGAGCgcaacgaGCGGgccGCGCGcGCGGUgCAgcgcGGCCa -3'
miRNA:   3'- aCUCG-------UGCCa--CGCGC-UGUCA-GU----CCGG- -5'
7022 3' -58.1 NC_001875.2 + 113595 0.66 0.785513
Target:  5'- -cAGCACGGcGUucgaGuCGGCGG-CGGGCCg -3'
miRNA:   3'- acUCGUGCCaCG----C-GCUGUCaGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 131513 0.66 0.7763
Target:  5'- cGGcGCGCGGUGCaGCGGCuGgaagCGGcGCa -3'
miRNA:   3'- aCU-CGUGCCACG-CGCUGuCa---GUC-CGg -5'
7022 3' -58.1 NC_001875.2 + 97537 0.66 0.7763
Target:  5'- gUGGGCGCguuuGGUG-GCcauGGCuGUCGGGCUg -3'
miRNA:   3'- -ACUCGUG----CCACgCG---CUGuCAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 57801 0.66 0.7763
Target:  5'- aGcAGCGCGGUuuuuaGCGCGGCAaUCuuguGcGCCg -3'
miRNA:   3'- aC-UCGUGCCA-----CGCGCUGUcAGu---C-CGG- -5'
7022 3' -58.1 NC_001875.2 + 11994 0.66 0.7763
Target:  5'- uUGGGCGCgGGUGUgGUGGCgAG-CGcGGCCa -3'
miRNA:   3'- -ACUCGUG-CCACG-CGCUG-UCaGU-CCGG- -5'
7022 3' -58.1 NC_001875.2 + 74371 0.66 0.7763
Target:  5'- cGuGCGCGGc-CGCGGCGcGuUCAGGCg -3'
miRNA:   3'- aCuCGUGCCacGCGCUGU-C-AGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 92066 0.66 0.770711
Target:  5'- cGAaCACGGUuucggcguuccaggcGCGCGugGGguuGGCCa -3'
miRNA:   3'- aCUcGUGCCA---------------CGCGCugUCaguCCGG- -5'
7022 3' -58.1 NC_001875.2 + 128038 0.66 0.766961
Target:  5'- -cGGC-CGGUG-GuCGACgcugAGUCGGGCCc -3'
miRNA:   3'- acUCGuGCCACgC-GCUG----UCAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 125470 0.66 0.766961
Target:  5'- --cGCGCGGUGCcCGACGacgacaUCGuGGCCg -3'
miRNA:   3'- acuCGUGCCACGcGCUGUc-----AGU-CCGG- -5'
7022 3' -58.1 NC_001875.2 + 41993 0.67 0.757501
Target:  5'- uUGAGCACGGcgGUGaaaaaauCGG-CGGGCCc -3'
miRNA:   3'- -ACUCGUGCCa-CGCgcu----GUCaGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 2540 0.67 0.747932
Target:  5'- cGGGC-CGGUGaacaaCGGCGcGUCGGGCg -3'
miRNA:   3'- aCUCGuGCCACgc---GCUGU-CAGUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.