miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7024 5' -53.2 NC_001875.2 + 31981 0.66 0.963058
Target:  5'- gUGGCGCGCguacgGCCgGUUUGuGAGCGg-- -3'
miRNA:   3'- gAUCGUGUG-----CGG-CAAGCuCUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 126620 0.66 0.963058
Target:  5'- gUGGCGCAUGUCGaucguggcgUCGGGcGCGUa- -3'
miRNA:   3'- gAUCGUGUGCGGCa--------AGCUCuCGCAag -5'
7024 5' -53.2 NC_001875.2 + 19875 0.66 0.963058
Target:  5'- -cGGCGCggGCGCCGUUUGcGAaacGCGUg- -3'
miRNA:   3'- gaUCGUG--UGCGGCAAGCuCU---CGCAag -5'
7024 5' -53.2 NC_001875.2 + 123902 0.66 0.963058
Target:  5'- --cGCaACGgGCCGUUCGAauuGAGCGc-- -3'
miRNA:   3'- gauCG-UGUgCGGCAAGCU---CUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 77261 0.66 0.95945
Target:  5'- -gGGCGCGcCGCCGggCGA-AGCGg-- -3'
miRNA:   3'- gaUCGUGU-GCGGCaaGCUcUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 9639 0.66 0.959077
Target:  5'- --uGCGCGCGCCGUgcguguuUCGcGAGCu--- -3'
miRNA:   3'- gauCGUGUGCGGCA-------AGCuCUCGcaag -5'
7024 5' -53.2 NC_001875.2 + 99067 0.66 0.955607
Target:  5'- --cGCcCACGCCGcgCGAGGacGCGcUCg -3'
miRNA:   3'- gauCGuGUGCGGCaaGCUCU--CGCaAG- -5'
7024 5' -53.2 NC_001875.2 + 62754 0.66 0.955607
Target:  5'- gUGGCcCGCGCCGUUgaacgcgcaGGGGuGCGUUUg -3'
miRNA:   3'- gAUCGuGUGCGGCAAg--------CUCU-CGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 3035 0.66 0.955607
Target:  5'- --uGUACACGCCGUUgGGcAGCGc-- -3'
miRNA:   3'- gauCGUGUGCGGCAAgCUcUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 42642 0.66 0.955209
Target:  5'- uCUGGCACGCccaGCCGguccgcgUCGAGgcugauuugcgccAGCGUg- -3'
miRNA:   3'- -GAUCGUGUG---CGGCa------AGCUC-------------UCGCAag -5'
7024 5' -53.2 NC_001875.2 + 75601 0.66 0.951523
Target:  5'- -cAGcCGCGCGCCGgcguguaCGAGuuuGCGUUUu -3'
miRNA:   3'- gaUC-GUGUGCGGCaa-----GCUCu--CGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 42493 0.66 0.951523
Target:  5'- --cGCGCACGCCG-UCGuccGCGUg- -3'
miRNA:   3'- gauCGUGUGCGGCaAGCucuCGCAag -5'
7024 5' -53.2 NC_001875.2 + 83325 0.67 0.942621
Target:  5'- -gGGCGCGCGCCGggCG-GcGCGc-- -3'
miRNA:   3'- gaUCGUGUGCGGCaaGCuCuCGCaag -5'
7024 5' -53.2 NC_001875.2 + 77674 0.67 0.937795
Target:  5'- -cAGCGC-CGCUGUcCGAGcGCGUa- -3'
miRNA:   3'- gaUCGUGuGCGGCAaGCUCuCGCAag -5'
7024 5' -53.2 NC_001875.2 + 35138 0.67 0.935795
Target:  5'- -gGGCGCAaguuuagcgaaaaGCCGUacUCGcuAGCGUUCa -3'
miRNA:   3'- gaUCGUGUg------------CGGCA--AGCucUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 12855 0.67 0.932718
Target:  5'- gCUAGCACGCaGCCGUggUUGGucGUGUUg -3'
miRNA:   3'- -GAUCGUGUG-CGGCA--AGCUcuCGCAAg -5'
7024 5' -53.2 NC_001875.2 + 113164 0.68 0.915965
Target:  5'- --cGCGCGCGCCGUUUGAuauGGCa--- -3'
miRNA:   3'- gauCGUGUGCGGCAAGCUc--UCGcaag -5'
7024 5' -53.2 NC_001875.2 + 78416 0.68 0.909875
Target:  5'- gCUGGCcguguGCGCGCUGggcaacaaCGAGuuuGCGUUCg -3'
miRNA:   3'- -GAUCG-----UGUGCGGCaa------GCUCu--CGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 75964 0.68 0.909875
Target:  5'- uUAGUACGuuugcCGCCGUagUCGAGucGGCGUgcUCa -3'
miRNA:   3'- gAUCGUGU-----GCGGCA--AGCUC--UCGCA--AG- -5'
7024 5' -53.2 NC_001875.2 + 77415 0.68 0.909875
Target:  5'- --cGcCACGCGCUGUUCGgcgacaAGAGCGg-- -3'
miRNA:   3'- gauC-GUGUGCGGCAAGC------UCUCGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.