miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7025 5' -47 NC_001875.2 + 48529 0.66 0.999812
Target:  5'- -------cGGCGCGCGCCccgCGGGu -3'
miRNA:   3'- gauuuuuaUCGUGCGCGGcaaGCUCu -5'
7025 5' -47 NC_001875.2 + 79499 0.66 0.999812
Target:  5'- -------cGGCACGCGCCGcacUUGAa- -3'
miRNA:   3'- gauuuuuaUCGUGCGCGGCa--AGCUcu -5'
7025 5' -47 NC_001875.2 + 19875 0.66 0.999812
Target:  5'- -------cGGCGCggGCGCCGUUUGcGAa -3'
miRNA:   3'- gauuuuuaUCGUG--CGCGGCAAGCuCU- -5'
7025 5' -47 NC_001875.2 + 125150 0.66 0.999812
Target:  5'- gUAcAAAUGGCGUGCGCCGUcgUCGc-- -3'
miRNA:   3'- gAUuUUUAUCGUGCGCGGCA--AGCucu -5'
7025 5' -47 NC_001875.2 + 120058 0.66 0.999812
Target:  5'- ---uGGGUGGUcagGCGCGCCG--CGAGGu -3'
miRNA:   3'- gauuUUUAUCG---UGCGCGGCaaGCUCU- -5'
7025 5' -47 NC_001875.2 + 130434 0.66 0.999758
Target:  5'- gCUAAAAAUAGCACaccaggGCGCCGc-UGAc- -3'
miRNA:   3'- -GAUUUUUAUCGUG------CGCGGCaaGCUcu -5'
7025 5' -47 NC_001875.2 + 28920 0.66 0.99969
Target:  5'- -cAAGAccGUGGC-CGCGUauUUCGAGAg -3'
miRNA:   3'- gaUUUU--UAUCGuGCGCGgcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 31734 0.66 0.99969
Target:  5'- -cGAAGuUGGCcCGCGgCGUUUGAGc -3'
miRNA:   3'- gaUUUUuAUCGuGCGCgGCAAGCUCu -5'
7025 5' -47 NC_001875.2 + 65776 0.66 0.99969
Target:  5'- gCUGGGcg-AGCACGCGCgCGgcgUCGGc- -3'
miRNA:   3'- -GAUUUuuaUCGUGCGCG-GCa--AGCUcu -5'
7025 5' -47 NC_001875.2 + 62345 0.66 0.99969
Target:  5'- uUAAGug-GGCGCgGCGCCaGUUUGGGu -3'
miRNA:   3'- gAUUUuuaUCGUG-CGCGG-CAAGCUCu -5'
7025 5' -47 NC_001875.2 + 77261 0.66 0.99969
Target:  5'- -------gGGCGCGcCGCCGggCGAa- -3'
miRNA:   3'- gauuuuuaUCGUGC-GCGGCaaGCUcu -5'
7025 5' -47 NC_001875.2 + 126820 0.66 0.99969
Target:  5'- aCUGAAucugacaaAGCGCGCGCCGggCa--- -3'
miRNA:   3'- -GAUUUuua-----UCGUGCGCGGCaaGcucu -5'
7025 5' -47 NC_001875.2 + 83556 0.67 0.999505
Target:  5'- uUAAcAAUGGCACGCGgCGgacacaUGAGGu -3'
miRNA:   3'- gAUUuUUAUCGUGCGCgGCaa----GCUCU- -5'
7025 5' -47 NC_001875.2 + 3912 0.67 0.999381
Target:  5'- gCUAAGA--AGCuGCGCGCUGagcuuugCGAGAa -3'
miRNA:   3'- -GAUUUUuaUCG-UGCGCGGCaa-----GCUCU- -5'
7025 5' -47 NC_001875.2 + 89523 0.67 0.99923
Target:  5'- ------uUGGCGuCGCGCCGauaggCGGGAu -3'
miRNA:   3'- gauuuuuAUCGU-GCGCGGCaa---GCUCU- -5'
7025 5' -47 NC_001875.2 + 66350 0.67 0.99923
Target:  5'- aCUGGAA--GGCGCGCauccaGUCGgcgUCGAGGu -3'
miRNA:   3'- -GAUUUUuaUCGUGCG-----CGGCa--AGCUCU- -5'
7025 5' -47 NC_001875.2 + 78122 0.67 0.99923
Target:  5'- -------aAGUACGCGCCGgUCGucaAGAu -3'
miRNA:   3'- gauuuuuaUCGUGCGCGGCaAGC---UCU- -5'
7025 5' -47 NC_001875.2 + 86238 0.67 0.99923
Target:  5'- uUGGAGu--GCuGCGCGCCGgagUCGGGc -3'
miRNA:   3'- gAUUUUuauCG-UGCGCGGCa--AGCUCu -5'
7025 5' -47 NC_001875.2 + 42643 0.67 0.998832
Target:  5'- ------cUGGCACGCccaGCCGguccgcgUCGAGGc -3'
miRNA:   3'- gauuuuuAUCGUGCG---CGGCa------AGCUCU- -5'
7025 5' -47 NC_001875.2 + 93393 0.68 0.998575
Target:  5'- ------cUAGCGCGCGCCGgcacuugcugcuUUCGuAGGc -3'
miRNA:   3'- gauuuuuAUCGUGCGCGGC------------AAGC-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.