miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7029 3' -45.8 NC_001875.2 + 47707 0.66 0.999959
Target:  5'- cGgGGCAAGuGCACGAcugccugCUGCuuGAGCc -3'
miRNA:   3'- -CgCCGUUU-UGUGUUua-----GACGugCUUG- -5'
7029 3' -45.8 NC_001875.2 + 26899 0.66 0.999944
Target:  5'- -gGGCGuuACGCGcgcguUCUGCugGcGCa -3'
miRNA:   3'- cgCCGUuuUGUGUuu---AGACGugCuUG- -5'
7029 3' -45.8 NC_001875.2 + 45213 0.66 0.999925
Target:  5'- cGCuGGCGu-ACAC--GUCgcGCGCGAACa -3'
miRNA:   3'- -CG-CCGUuuUGUGuuUAGa-CGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 1031 0.66 0.999959
Target:  5'- cGUGGCGGGgcccgaggcGCACAGcgUUGgGCGcAACg -3'
miRNA:   3'- -CGCCGUUU---------UGUGUUuaGACgUGC-UUG- -5'
7029 3' -45.8 NC_001875.2 + 82312 0.66 0.999901
Target:  5'- cGCGGC---GCGCAAuUCUacUACGAGCu -3'
miRNA:   3'- -CGCCGuuuUGUGUUuAGAc-GUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 103951 0.66 0.999901
Target:  5'- gGCGGCcuguuGCACAcggcauucgAGUCUGcCAUGGAa -3'
miRNA:   3'- -CGCCGuuu--UGUGU---------UUAGAC-GUGCUUg -5'
7029 3' -45.8 NC_001875.2 + 55718 0.66 0.999959
Target:  5'- aCGGCc--GCGCAAAUacgGC-CGAGCg -3'
miRNA:   3'- cGCCGuuuUGUGUUUAga-CGuGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 6880 0.66 0.999943
Target:  5'- aCGGCGAGuccuaccauuuguACAgAAuagUGCACGAGCa -3'
miRNA:   3'- cGCCGUUU-------------UGUgUUuagACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 42465 0.66 0.999944
Target:  5'- uGCGGCGAGccACGCAGcaacacgcGCACGcGCa -3'
miRNA:   3'- -CGCCGUUU--UGUGUUuaga----CGUGCuUG- -5'
7029 3' -45.8 NC_001875.2 + 43313 0.66 0.999925
Target:  5'- aGCGGCGcgcGCGCGGGUCgGCGUGGu- -3'
miRNA:   3'- -CGCCGUuu-UGUGUUUAGaCGUGCUug -5'
7029 3' -45.8 NC_001875.2 + 122959 0.66 0.999925
Target:  5'- aGCGGCAAuauucCACcgAGAUUUGCACcguGGCg -3'
miRNA:   3'- -CGCCGUUuu---GUG--UUUAGACGUGc--UUG- -5'
7029 3' -45.8 NC_001875.2 + 59743 0.66 0.999925
Target:  5'- aGUGGUucAGCAC---UUUGCGCGAAa -3'
miRNA:   3'- -CGCCGuuUUGUGuuuAGACGUGCUUg -5'
7029 3' -45.8 NC_001875.2 + 126834 0.66 0.999901
Target:  5'- gGCGGCGcaaaguGCACAAGUgCcGCAC-AGCa -3'
miRNA:   3'- -CGCCGUuu----UGUGUUUA-GaCGUGcUUG- -5'
7029 3' -45.8 NC_001875.2 + 41356 0.66 0.999959
Target:  5'- cGCGcGCAguuuGAACGCGcg-CUGCAgCGAAa -3'
miRNA:   3'- -CGC-CGU----UUUGUGUuuaGACGU-GCUUg -5'
7029 3' -45.8 NC_001875.2 + 72563 0.66 0.999959
Target:  5'- uGCgGGCGcGGGCGCGGGcgCUGCggguGCGGGCg -3'
miRNA:   3'- -CG-CCGU-UUUGUGUUUa-GACG----UGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 122135 0.66 0.999925
Target:  5'- cGCGGCGcgGC-CGGcgC-GCACGAcgGCg -3'
miRNA:   3'- -CGCCGUuuUGuGUUuaGaCGUGCU--UG- -5'
7029 3' -45.8 NC_001875.2 + 29550 0.66 0.999953
Target:  5'- uGCGGCGcgccaauugcucggGAGCucauucuGCAAcgC-GCGCGAGCg -3'
miRNA:   3'- -CGCCGU--------------UUUG-------UGUUuaGaCGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 61051 0.66 0.999944
Target:  5'- uUGGCAAAGCAUuccacuugCUGCACa--- -3'
miRNA:   3'- cGCCGUUUUGUGuuua----GACGUGcuug -5'
7029 3' -45.8 NC_001875.2 + 66680 0.66 0.999901
Target:  5'- gGCaGCGGGAUGgGAAUgCUGCACGuGACc -3'
miRNA:   3'- -CGcCGUUUUGUgUUUA-GACGUGC-UUG- -5'
7029 3' -45.8 NC_001875.2 + 31820 0.66 0.999944
Target:  5'- cGCGGC-AAGCGCcgcGUUUGCGCu--- -3'
miRNA:   3'- -CGCCGuUUUGUGuu-UAGACGUGcuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.