miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7029 3' -45.8 NC_001875.2 + 164 0.68 0.999274
Target:  5'- cGCGGCGccAAACACGuggcUCUGCA--AGCu -3'
miRNA:   3'- -CGCCGU--UUUGUGUuu--AGACGUgcUUG- -5'
7029 3' -45.8 NC_001875.2 + 1031 0.66 0.999959
Target:  5'- cGUGGCGGGgcccgaggcGCACAGcgUUGgGCGcAACg -3'
miRNA:   3'- -CGCCGUUU---------UGUGUUuaGACgUGC-UUG- -5'
7029 3' -45.8 NC_001875.2 + 2825 0.69 0.997991
Target:  5'- cGCGGCGAcgUugGCGAGUagCUGgGCGAAUa -3'
miRNA:   3'- -CGCCGUUuuG--UGUUUA--GACgUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 3133 0.82 0.644685
Target:  5'- gGCGGCGAAGCcCg---CUGCGCGGACg -3'
miRNA:   3'- -CGCCGUUUUGuGuuuaGACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 6880 0.66 0.999943
Target:  5'- aCGGCGAGuccuaccauuuguACAgAAuagUGCACGAGCa -3'
miRNA:   3'- cGCCGUUU-------------UGUgUUuagACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 7262 0.69 0.998341
Target:  5'- aGCGGCcuGGCGCGGGUC-GC-CGAc- -3'
miRNA:   3'- -CGCCGuuUUGUGUUUAGaCGuGCUug -5'
7029 3' -45.8 NC_001875.2 + 7459 0.69 0.997991
Target:  5'- uGCGGCGGugUACGGccgauUCUGCGCcauuGGACg -3'
miRNA:   3'- -CGCCGUUuuGUGUUu----AGACGUG----CUUG- -5'
7029 3' -45.8 NC_001875.2 + 8002 0.67 0.999636
Target:  5'- gGCGGCugauuGCGCAA--CUGCugGuuGCg -3'
miRNA:   3'- -CGCCGuuu--UGUGUUuaGACGugCu-UG- -5'
7029 3' -45.8 NC_001875.2 + 9010 0.67 0.999869
Target:  5'- cGCGGCGcaccAAAUcCGAGUgUGCACGu-- -3'
miRNA:   3'- -CGCCGU----UUUGuGUUUAgACGUGCuug -5'
7029 3' -45.8 NC_001875.2 + 9363 0.68 0.998889
Target:  5'- -gGGCAu--CGCAAAggugCUGCGCGcGCc -3'
miRNA:   3'- cgCCGUuuuGUGUUUa---GACGUGCuUG- -5'
7029 3' -45.8 NC_001875.2 + 9462 0.69 0.998638
Target:  5'- cGCGGUuaccgcuGAACAUGAugcgCUGCACGGc- -3'
miRNA:   3'- -CGCCGu------UUUGUGUUua--GACGUGCUug -5'
7029 3' -45.8 NC_001875.2 + 10663 0.69 0.99758
Target:  5'- gGCGGCGGAcugcacuugGCGCAGGcgCUGC-CGcAACg -3'
miRNA:   3'- -CGCCGUUU---------UGUGUUUa-GACGuGC-UUG- -5'
7029 3' -45.8 NC_001875.2 + 11638 0.68 0.99947
Target:  5'- gGUGGCAAcaacgaggaccgauuAACACAGAUUguUGCGC-AGCu -3'
miRNA:   3'- -CGCCGUU---------------UUGUGUUUAG--ACGUGcUUG- -5'
7029 3' -45.8 NC_001875.2 + 11882 0.76 0.910603
Target:  5'- uGCGGCA--GCGCGuGUUagaguugUGCGCGAACg -3'
miRNA:   3'- -CGCCGUuuUGUGUuUAG-------ACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 11914 0.67 0.999715
Target:  5'- gGCGGC-GAGCAgGuguUUUGCGCGcGGCg -3'
miRNA:   3'- -CGCCGuUUUGUgUuu-AGACGUGC-UUG- -5'
7029 3' -45.8 NC_001875.2 + 11988 0.68 0.999274
Target:  5'- aCGGCGuuGGGCGCGGGUgUGgugGCGAGCg -3'
miRNA:   3'- cGCCGU--UUUGUGUUUAgACg--UGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 12696 0.68 0.998889
Target:  5'- gGCGGCAAAAUguuaugggcgACAAAg-UGCGCGGc- -3'
miRNA:   3'- -CGCCGUUUUG----------UGUUUagACGUGCUug -5'
7029 3' -45.8 NC_001875.2 + 13395 0.71 0.993399
Target:  5'- aCGGCAccAGGCGCGc--UUGCACGGGCc -3'
miRNA:   3'- cGCCGU--UUUGUGUuuaGACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 14687 0.68 0.999419
Target:  5'- cGCuuGC-GAGCGCGAc-CUGCGCGAGCa -3'
miRNA:   3'- -CGc-CGuUUUGUGUUuaGACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 17248 0.68 0.999419
Target:  5'- cGCGGCAAcaaGACGCcgcGUUUGC-CGAcGCg -3'
miRNA:   3'- -CGCCGUU---UUGUGuu-UAGACGuGCU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.