miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7029 3' -45.8 NC_001875.2 + 131586 1.15 0.010177
Target:  5'- cGCGGCAAAACACAAAUCUGCACGAACg -3'
miRNA:   3'- -CGCCGUUUUGUGUUUAGACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 117326 0.85 0.491525
Target:  5'- aGCGGCuuGACACGGcgCgGCGCGGGCg -3'
miRNA:   3'- -CGCCGuuUUGUGUUuaGaCGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 55800 0.82 0.644685
Target:  5'- cGCGGCAAGACACucaGGAUCUGgAgGGGCc -3'
miRNA:   3'- -CGCCGUUUUGUG---UUUAGACgUgCUUG- -5'
7029 3' -45.8 NC_001875.2 + 3133 0.82 0.644685
Target:  5'- gGCGGCGAAGCcCg---CUGCGCGGACg -3'
miRNA:   3'- -CGCCGUUUUGuGuuuaGACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 80891 0.81 0.689142
Target:  5'- aGUGGCAGA--GCAAGUC-GCGCGAGCg -3'
miRNA:   3'- -CGCCGUUUugUGUUUAGaCGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 104191 0.79 0.79466
Target:  5'- cGCGGCAuuAUGCGAcaaUGCGCGAACc -3'
miRNA:   3'- -CGCCGUuuUGUGUUuagACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 123436 0.78 0.850363
Target:  5'- cGCGGCGuuACGCAGAUCgcguuugcGCGCGGu- -3'
miRNA:   3'- -CGCCGUuuUGUGUUUAGa-------CGUGCUug -5'
7029 3' -45.8 NC_001875.2 + 86125 0.78 0.850363
Target:  5'- gGCGGCGGAGCACccuUCgucGCGCGAGu -3'
miRNA:   3'- -CGCCGUUUUGUGuuuAGa--CGUGCUUg -5'
7029 3' -45.8 NC_001875.2 + 99756 0.77 0.867147
Target:  5'- uGCuGUGAcGCGCAAGcCUGCACGAGCg -3'
miRNA:   3'- -CGcCGUUuUGUGUUUaGACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 84340 0.76 0.897641
Target:  5'- aGCGGCGAGugGCGGAgcggCUGCGCc--- -3'
miRNA:   3'- -CGCCGUUUugUGUUUa---GACGUGcuug -5'
7029 3' -45.8 NC_001875.2 + 11882 0.76 0.910603
Target:  5'- uGCGGCA--GCGCGuGUUagaguugUGCGCGAACg -3'
miRNA:   3'- -CGCCGUuuUGUGUuUAG-------ACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 34126 0.76 0.920119
Target:  5'- cGCGGUcuAGCGCGAAgcaauacgauucgcCUGCGCGAAUg -3'
miRNA:   3'- -CGCCGuuUUGUGUUUa-------------GACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 128918 0.75 0.923747
Target:  5'- cGCGGUGAAuuuGCACGAggCggugaauagGCACGAGCg -3'
miRNA:   3'- -CGCCGUUU---UGUGUUuaGa--------CGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 35410 0.75 0.923747
Target:  5'- cGCGaGCGAcgccgacaAGCGCGAGUUUGCGCGcGACu -3'
miRNA:   3'- -CGC-CGUU--------UUGUGUUUAGACGUGC-UUG- -5'
7029 3' -45.8 NC_001875.2 + 85263 0.75 0.92785
Target:  5'- uCGGCGcGGACACGAgcgccccgaacacgGUUUGCGCGGGCg -3'
miRNA:   3'- cGCCGU-UUUGUGUU--------------UAGACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 94476 0.75 0.940348
Target:  5'- aGCGGC---GCGCGcGUUcGCACGAGCg -3'
miRNA:   3'- -CGCCGuuuUGUGUuUAGaCGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 95713 0.75 0.945315
Target:  5'- gGCGcGCuGAAACGCGAAg-UGCAUGAGCg -3'
miRNA:   3'- -CGC-CG-UUUUGUGUUUagACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 50419 0.74 0.950003
Target:  5'- -gGGCAc-GCGCAGG-CUGCugGAACa -3'
miRNA:   3'- cgCCGUuuUGUGUUUaGACGugCUUG- -5'
7029 3' -45.8 NC_001875.2 + 74381 0.74 0.954415
Target:  5'- cGCGGCGcguucAGGCGCGGGUaCUGCcuggugcaaACGGACg -3'
miRNA:   3'- -CGCCGU-----UUUGUGUUUA-GACG---------UGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 38715 0.74 0.958556
Target:  5'- gGCGGCAAc-CACAucAUCaUGCugGAGCc -3'
miRNA:   3'- -CGCCGUUuuGUGUu-UAG-ACGugCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.