Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7029 | 3' | -45.8 | NC_001875.2 | + | 41709 | 0.72 | 0.988277 |
Target: 5'- -gGGCGuauGCGCGGcgCUGCGCGGc- -3' miRNA: 3'- cgCCGUuu-UGUGUUuaGACGUGCUug -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 31745 | 0.74 | 0.965697 |
Target: 5'- cGCGGCGuuuGAGCGCGAGUUUGucaauucaacguaCugGGACa -3' miRNA: 3'- -CGCCGU---UUUGUGUUUAGAC-------------GugCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 47180 | 0.73 | 0.969411 |
Target: 5'- cGCuGCAcGAAUGCAAGgcgCUGCugGAGCa -3' miRNA: 3'- -CGcCGU-UUUGUGUUUa--GACGugCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 55531 | 0.73 | 0.97253 |
Target: 5'- gGCGGCucgGAAUGCGAcgC-GCAUGAACa -3' miRNA: 3'- -CGCCGu--UUUGUGUUuaGaCGUGCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 30805 | 0.73 | 0.975412 |
Target: 5'- uGCGGUucaaaGCAAGUUUGCGCGGcgGCa -3' miRNA: 3'- -CGCCGuuuugUGUUUAGACGUGCU--UG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 57352 | 0.73 | 0.975412 |
Target: 5'- cGCGGCGAAAcCGCAAGUacgUGCcuucaaucACGGGCg -3' miRNA: 3'- -CGCCGUUUU-GUGUUUAg--ACG--------UGCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 53379 | 0.72 | 0.980504 |
Target: 5'- uGCGGCGcagcGAGCGCuuuugCgggcGCACGAACg -3' miRNA: 3'- -CGCCGU----UUUGUGuuua-Ga---CGUGCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 43396 | 0.72 | 0.984765 |
Target: 5'- -aGGUAGGACACGggcgacaagcaGAUUUGCGCGuGCg -3' miRNA: 3'- cgCCGUUUUGUGU-----------UUAGACGUGCuUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 42213 | 0.72 | 0.984765 |
Target: 5'- cGCGGCGGcACGCGuggugcuugucAAUgUGCACGcGCa -3' miRNA: 3'- -CGCCGUUuUGUGU-----------UUAgACGUGCuUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 38715 | 0.74 | 0.958556 |
Target: 5'- gGCGGCAAc-CACAucAUCaUGCugGAGCc -3' miRNA: 3'- -CGCCGUUuuGUGUu-UAG-ACGugCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 74381 | 0.74 | 0.954415 |
Target: 5'- cGCGGCGcguucAGGCGCGGGUaCUGCcuggugcaaACGGACg -3' miRNA: 3'- -CGCCGU-----UUUGUGUUUA-GACG---------UGCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 95713 | 0.75 | 0.945315 |
Target: 5'- gGCGcGCuGAAACGCGAAg-UGCAUGAGCg -3' miRNA: 3'- -CGC-CG-UUUUGUGUUUagACGUGCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 117326 | 0.85 | 0.491525 |
Target: 5'- aGCGGCuuGACACGGcgCgGCGCGGGCg -3' miRNA: 3'- -CGCCGuuUUGUGUUuaGaCGUGCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 104191 | 0.79 | 0.79466 |
Target: 5'- cGCGGCAuuAUGCGAcaaUGCGCGAACc -3' miRNA: 3'- -CGCCGUuuUGUGUUuagACGUGCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 86125 | 0.78 | 0.850363 |
Target: 5'- gGCGGCGGAGCACccuUCgucGCGCGAGu -3' miRNA: 3'- -CGCCGUUUUGUGuuuAGa--CGUGCUUg -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 84340 | 0.76 | 0.897641 |
Target: 5'- aGCGGCGAGugGCGGAgcggCUGCGCc--- -3' miRNA: 3'- -CGCCGUUUugUGUUUa---GACGUGcuug -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 11882 | 0.76 | 0.910603 |
Target: 5'- uGCGGCA--GCGCGuGUUagaguugUGCGCGAACg -3' miRNA: 3'- -CGCCGUuuUGUGUuUAG-------ACGUGCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 35410 | 0.75 | 0.923747 |
Target: 5'- cGCGaGCGAcgccgacaAGCGCGAGUUUGCGCGcGACu -3' miRNA: 3'- -CGC-CGUU--------UUGUGUUUAGACGUGC-UUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 128918 | 0.75 | 0.923747 |
Target: 5'- cGCGGUGAAuuuGCACGAggCggugaauagGCACGAGCg -3' miRNA: 3'- -CGCCGUUU---UGUGUUuaGa--------CGUGCUUG- -5' |
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7029 | 3' | -45.8 | NC_001875.2 | + | 85263 | 0.75 | 0.92785 |
Target: 5'- uCGGCGcGGACACGAgcgccccgaacacgGUUUGCGCGGGCg -3' miRNA: 3'- cGCCGU-UUUGUGUU--------------UAGACGUGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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