miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7037 3' -59.6 NC_001876.1 + 29968 0.66 0.384029
Target:  5'- aGUuGGGCCCGGCauGCGCCUGaacCCUGUa- -3'
miRNA:   3'- -CGuUUUGGGCCG--CGUGGGC---GGACGgg -5'
7037 3' -59.6 NC_001876.1 + 22435 0.66 0.384029
Target:  5'- aGCGA---UCGGCGCGCgCCGUUUGCg- -3'
miRNA:   3'- -CGUUuugGGCCGCGUG-GGCGGACGgg -5'
7037 3' -59.6 NC_001876.1 + 7774 0.66 0.375141
Target:  5'- aGCAu--CCCGGCccGCGCUgacaggccgCGCCUuCCCu -3'
miRNA:   3'- -CGUuuuGGGCCG--CGUGG---------GCGGAcGGG- -5'
7037 3' -59.6 NC_001876.1 + 14835 0.66 0.375141
Target:  5'- aGCGGccgcGCgCCGGCcCACCCuGCggGCCCu -3'
miRNA:   3'- -CGUUu---UG-GGCCGcGUGGG-CGgaCGGG- -5'
7037 3' -59.6 NC_001876.1 + 20751 0.66 0.375141
Target:  5'- uGCGAGGCUgGGUGCcaaGCCaugGCCaGCCa -3'
miRNA:   3'- -CGUUUUGGgCCGCG---UGGg--CGGaCGGg -5'
7037 3' -59.6 NC_001876.1 + 16048 0.66 0.369875
Target:  5'- cGCAAGcCCCGcGUGCACCgugcuacuaggCGUacugcgcgcggcuugCUGCCCu -3'
miRNA:   3'- -CGUUUuGGGC-CGCGUGG-----------GCG---------------GACGGG- -5'
7037 3' -59.6 NC_001876.1 + 14611 0.66 0.366393
Target:  5'- cGCGGcGACCCacccgaccGGUGCGgCUGCCccaggcgGCCCg -3'
miRNA:   3'- -CGUU-UUGGG--------CCGCGUgGGCGGa------CGGG- -5'
7037 3' -59.6 NC_001876.1 + 16644 0.66 0.366393
Target:  5'- cGCAAucCCCGGCaucGCAUCagugGCCauucaggcgGCCCa -3'
miRNA:   3'- -CGUUuuGGGCCG---CGUGGg---CGGa--------CGGG- -5'
7037 3' -59.6 NC_001876.1 + 23533 0.66 0.366393
Target:  5'- -gGAAGCUgaGGCGCugCCagaaGCCgaggaGCCCg -3'
miRNA:   3'- cgUUUUGGg-CCGCGugGG----CGGa----CGGG- -5'
7037 3' -59.6 NC_001876.1 + 25393 0.66 0.341002
Target:  5'- uGCc-AGCgCGGCGCGCCC-UC-GCCCu -3'
miRNA:   3'- -CGuuUUGgGCCGCGUGGGcGGaCGGG- -5'
7037 3' -59.6 NC_001876.1 + 27173 0.66 0.341002
Target:  5'- cCAAcGACCCGGCcuCGCCUGUgUggcGCCCa -3'
miRNA:   3'- cGUU-UUGGGCCGc-GUGGGCGgA---CGGG- -5'
7037 3' -59.6 NC_001876.1 + 8917 0.67 0.320046
Target:  5'- -----cCCCGGCGUAUCCGCauCUccuggguaacggcacGCCCg -3'
miRNA:   3'- cguuuuGGGCCGCGUGGGCG--GA---------------CGGG- -5'
7037 3' -59.6 NC_001876.1 + 24391 0.67 0.316909
Target:  5'- cGCu--GCuuGGCGaccaacCCCGCCcUGCUCa -3'
miRNA:   3'- -CGuuuUGggCCGCgu----GGGCGG-ACGGG- -5'
7037 3' -59.6 NC_001876.1 + 15372 0.67 0.301572
Target:  5'- ----cGCCCGGCGCGCgCUcCCUccGUCCg -3'
miRNA:   3'- cguuuUGGGCCGCGUG-GGcGGA--CGGG- -5'
7037 3' -59.6 NC_001876.1 + 8330 0.67 0.301572
Target:  5'- cGCGAccAGCUCGGUGgACCgUGgCUGCCa -3'
miRNA:   3'- -CGUU--UUGGGCCGCgUGG-GCgGACGGg -5'
7037 3' -59.6 NC_001876.1 + 16639 0.68 0.286813
Target:  5'- -gGAAGCCCccGCGCAggcggCCGCC-GCCCg -3'
miRNA:   3'- cgUUUUGGGc-CGCGUg----GGCGGaCGGG- -5'
7037 3' -59.6 NC_001876.1 + 22403 0.68 0.286813
Target:  5'- cGCuGAGgCCGcCGCuCCCGCCcUGCCg -3'
miRNA:   3'- -CGuUUUgGGCcGCGuGGGCGG-ACGGg -5'
7037 3' -59.6 NC_001876.1 + 22731 0.68 0.27965
Target:  5'- aGCAGc-CCCGaGC-CGCCCGCC-GCUCc -3'
miRNA:   3'- -CGUUuuGGGC-CGcGUGGGCGGaCGGG- -5'
7037 3' -59.6 NC_001876.1 + 11016 0.68 0.27263
Target:  5'- cGCGcGACCgCGGCG-GCCgcuuUGCCgggGCCCg -3'
miRNA:   3'- -CGUuUUGG-GCCGCgUGG----GCGGa--CGGG- -5'
7037 3' -59.6 NC_001876.1 + 24854 0.68 0.265752
Target:  5'- cCGAAGCCUGaGcCGCggaagGCCCGgCUGCCg -3'
miRNA:   3'- cGUUUUGGGC-C-GCG-----UGGGCgGACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.