miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7167 3' -58.2 NC_001900.1 + 41725 0.66 0.568813
Target:  5'- gGUucuCUGA-GGCCACGUCGGcgucGGAGGUa -3'
miRNA:   3'- -CGu--GGCUgCCGGUGUAGCC----CUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 20586 0.66 0.567751
Target:  5'- --uCCGACGG--ACAUCuGGGAguggaugGGGCCg -3'
miRNA:   3'- cguGGCUGCCggUGUAG-CCCU-------UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 8777 0.66 0.565628
Target:  5'- cGCGCCGACgugaaggaguucgaGGCaUACGUCGacuccuGGGGCCg -3'
miRNA:   3'- -CGUGGCUG--------------CCG-GUGUAGCcc----UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 23585 0.66 0.558213
Target:  5'- cGgGCCGugGgaGCCACGcUGGcGGcucAGGCCg -3'
miRNA:   3'- -CgUGGCugC--CGGUGUaGCC-CU---UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 42412 0.66 0.558213
Target:  5'- cGUAUCGGCaggcaGGCCAgGcccgaggggaUCGGGcuGGCCc -3'
miRNA:   3'- -CGUGGCUG-----CCGGUgU----------AGCCCuuCCGG- -5'
7167 3' -58.2 NC_001900.1 + 12620 0.66 0.558213
Target:  5'- aGC-UCGGCGaGCUGCGgccCGGuGAGGCCg -3'
miRNA:   3'- -CGuGGCUGC-CGGUGUa--GCCcUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 9931 0.66 0.557156
Target:  5'- -aGCCccCGGCCGuccagguCAUCGGGGAGcGCa -3'
miRNA:   3'- cgUGGcuGCCGGU-------GUAGCCCUUC-CGg -5'
7167 3' -58.2 NC_001900.1 + 11806 0.66 0.557156
Target:  5'- uGUA-CGACGGCCcUGUCGGcguccacGAAGGCa -3'
miRNA:   3'- -CGUgGCUGCCGGuGUAGCC-------CUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 3459 0.66 0.55188
Target:  5'- gGCACCGAcacccCGGCCAUcgacuacaacgacguGUCcgagaacccgcaGGGucuGGCCg -3'
miRNA:   3'- -CGUGGCU-----GCCGGUG---------------UAG------------CCCuu-CCGG- -5'
7167 3' -58.2 NC_001900.1 + 45416 0.66 0.54767
Target:  5'- cGUACCuGAagccuccacCGGCCAUGcCGGGGuaGGGCUc -3'
miRNA:   3'- -CGUGG-CU---------GCCGGUGUaGCCCU--UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 27187 0.66 0.54767
Target:  5'- cGCAuCUGACGGuCCuccuCuacCGGGA-GGCCc -3'
miRNA:   3'- -CGU-GGCUGCC-GGu---Gua-GCCCUuCCGG- -5'
7167 3' -58.2 NC_001900.1 + 24038 0.66 0.53719
Target:  5'- aCGCC--UGGCCACGggcacCGGGAccaccGGCCa -3'
miRNA:   3'- cGUGGcuGCCGGUGUa----GCCCUu----CCGG- -5'
7167 3' -58.2 NC_001900.1 + 3068 0.66 0.53719
Target:  5'- cCGCCGAC--CCGaccggCGGGAAGGUCg -3'
miRNA:   3'- cGUGGCUGccGGUgua--GCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 17244 0.66 0.526781
Target:  5'- cGCACUGGCGaGUUcuuCAcCGGGcucGGGCCg -3'
miRNA:   3'- -CGUGGCUGC-CGGu--GUaGCCCu--UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 38894 0.67 0.516448
Target:  5'- gGCcCUGAUGGCCuCAgCGG--AGGCCg -3'
miRNA:   3'- -CGuGGCUGCCGGuGUaGCCcuUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 4954 0.67 0.506198
Target:  5'- uCACCGAgGaguuCCACAgggUCGaGGAAGGCa -3'
miRNA:   3'- cGUGGCUgCc---GGUGU---AGC-CCUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 19582 0.67 0.506198
Target:  5'- cGCugCGGaucaagguCGGCCGCGagcaGGGcGGGCUc -3'
miRNA:   3'- -CGugGCU--------GCCGGUGUag--CCCuUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 33303 0.67 0.505177
Target:  5'- aGC-UCGACGGUCACAucuUCGGaGAucccgaucgugacGGGCUc -3'
miRNA:   3'- -CGuGGCUGCCGGUGU---AGCC-CU-------------UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 6330 0.67 0.496035
Target:  5'- cGCACCGgccACGGCCGCuGUC---AAGGUCa -3'
miRNA:   3'- -CGUGGC---UGCCGGUG-UAGcccUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 15281 0.67 0.496035
Target:  5'- -gGCCG-UGGCCGCA-CGGuucGGCCg -3'
miRNA:   3'- cgUGGCuGCCGGUGUaGCCcuuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.