miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7167 3' -58.2 NC_001900.1 + 21584 0.69 0.382542
Target:  5'- uCGCCGACGGCCGgcUC---AAGGCCg -3'
miRNA:   3'- cGUGGCUGCCGGUguAGcccUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 6332 0.67 0.475995
Target:  5'- cGCGa-GAUGGUCaacgACAUCGaGGAGGGUCu -3'
miRNA:   3'- -CGUggCUGCCGG----UGUAGC-CCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 10540 0.67 0.466127
Target:  5'- cGCACUGACccGCUACucgCGGGAcauGGCg -3'
miRNA:   3'- -CGUGGCUGc-CGGUGua-GCCCUu--CCGg -5'
7167 3' -58.2 NC_001900.1 + 38717 0.68 0.446715
Target:  5'- -aGCCuucGCGGCgUACGUCGGGGugcucGGGUCa -3'
miRNA:   3'- cgUGGc--UGCCG-GUGUAGCCCU-----UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 20364 0.68 0.44098
Target:  5'- --uUCGACGGCCaggagcugcccugguACAUCGccgaGGAGGGCa -3'
miRNA:   3'- cguGGCUGCCGG---------------UGUAGC----CCUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 3347 0.68 0.43718
Target:  5'- cCACCGcaGCGGCCACGUUcuGcuGGCCc -3'
miRNA:   3'- cGUGGC--UGCCGGUGUAGccCuuCCGG- -5'
7167 3' -58.2 NC_001900.1 + 24552 0.68 0.436232
Target:  5'- cGCGCCGACcGCCgugaccggagucaGCAcCGGGucgaacgcuGGCCa -3'
miRNA:   3'- -CGUGGCUGcCGG-------------UGUaGCCCuu-------CCGG- -5'
7167 3' -58.2 NC_001900.1 + 44924 0.68 0.409293
Target:  5'- uCACCGcCGGCCGCuUCGccGGucGGCa -3'
miRNA:   3'- cGUGGCuGCCGGUGuAGC--CCuuCCGg -5'
7167 3' -58.2 NC_001900.1 + 25252 0.69 0.391329
Target:  5'- aGCGCCGAUaGCCGaccggagcccguCGUCGGaccacAGGGCCa -3'
miRNA:   3'- -CGUGGCUGcCGGU------------GUAGCCc----UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 15281 0.67 0.496035
Target:  5'- -gGCCG-UGGCCGCA-CGGuucGGCCg -3'
miRNA:   3'- cgUGGCuGCCGGUGUaGCCcuuCCGG- -5'
7167 3' -58.2 NC_001900.1 + 469 0.67 0.496035
Target:  5'- uGCACgCGGCuaccGGCCGCuagUGGGuugcgucuGGCCu -3'
miRNA:   3'- -CGUG-GCUG----CCGGUGua-GCCCuu------CCGG- -5'
7167 3' -58.2 NC_001900.1 + 26981 0.67 0.496035
Target:  5'- cGUGCCGcUGGCC---UC-GGAAGGCCg -3'
miRNA:   3'- -CGUGGCuGCCGGuguAGcCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 23585 0.66 0.558213
Target:  5'- cGgGCCGugGgaGCCACGcUGGcGGcucAGGCCg -3'
miRNA:   3'- -CgUGGCugC--CGGUGUaGCC-CU---UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 12620 0.66 0.558213
Target:  5'- aGC-UCGGCGaGCUGCGgccCGGuGAGGCCg -3'
miRNA:   3'- -CGuGGCUGC-CGGUGUa--GCCcUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 11806 0.66 0.557156
Target:  5'- uGUA-CGACGGCCcUGUCGGcguccacGAAGGCa -3'
miRNA:   3'- -CGUgGCUGCCGGuGUAGCC-------CUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 9931 0.66 0.557156
Target:  5'- -aGCCccCGGCCGuccagguCAUCGGGGAGcGCa -3'
miRNA:   3'- cgUGGcuGCCGGU-------GUAGCCCUUC-CGg -5'
7167 3' -58.2 NC_001900.1 + 24038 0.66 0.53719
Target:  5'- aCGCC--UGGCCACGggcacCGGGAccaccGGCCa -3'
miRNA:   3'- cGUGGcuGCCGGUGUa----GCCCUu----CCGG- -5'
7167 3' -58.2 NC_001900.1 + 38894 0.67 0.516448
Target:  5'- gGCcCUGAUGGCCuCAgCGG--AGGCCg -3'
miRNA:   3'- -CGuGGCUGCCGGuGUaGCCcuUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 4954 0.67 0.506198
Target:  5'- uCACCGAgGaguuCCACAgggUCGaGGAAGGCa -3'
miRNA:   3'- cGUGGCUgCc---GGUGU---AGC-CCUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 33303 0.67 0.505177
Target:  5'- aGC-UCGACGGUCACAucuUCGGaGAucccgaucgugacGGGCUc -3'
miRNA:   3'- -CGuGGCUGCCGGUGU---AGCC-CU-------------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.