Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7170 | 3' | -61.6 | NC_001900.1 | + | 47441 | 0.75 | 0.080989 |
Target: 5'- -cGCUGaCCgggGGUGUcGCCACCGGCCg -3' miRNA: 3'- aaCGAC-GGag-CUACGcCGGUGGCCGG- -5' |
|||||||
7170 | 3' | -61.6 | NC_001900.1 | + | 6730 | 0.76 | 0.066467 |
Target: 5'- cUGCgGCCUuccCGAUGUGGCCGUCGGUCg -3' miRNA: 3'- aACGaCGGA---GCUACGCCGGUGGCCGG- -5' |
|||||||
7170 | 3' | -61.6 | NC_001900.1 | + | 23940 | 0.76 | 0.067798 |
Target: 5'- -aGCgGUCUCGGUGCGGCUcgguccaccucgaaACCGGCg -3' miRNA: 3'- aaCGaCGGAGCUACGCCGG--------------UGGCCGg -5' |
|||||||
7170 | 3' | -61.6 | NC_001900.1 | + | 41099 | 1.09 | 0.000168 |
Target: 5'- gUUGCUGCCUCGAUGCGGCCACCGGCCg -3' miRNA: 3'- -AACGACGGAGCUACGCCGGUGGCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home