miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7174 5' -52.6 NC_001900.1 + 30980 0.81 0.128073
Target:  5'- aGGAACGACgcgauggacgcgccaGCCUGCAccacGGCCGCAGCc -3'
miRNA:   3'- -CCUUGUUG---------------UGGACGUca--UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 22752 0.69 0.612003
Target:  5'- cGGAugGACGCCgaaGC-GUGGCUcgcgucugagaaGCGGCu -3'
miRNA:   3'- -CCUugUUGUGGa--CGuCAUCGG------------CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 16011 0.72 0.448889
Target:  5'- cGGuAGCGGCg---GCGGUGGCCaGCAGCa -3'
miRNA:   3'- -CC-UUGUUGuggaCGUCAUCGG-CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 20688 0.73 0.437815
Target:  5'- cGGuGACgAGCACCUGCAGUGGCaggucuuCGCuGUc -3'
miRNA:   3'- -CC-UUG-UUGUGGACGUCAUCG-------GCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 23593 0.73 0.40939
Target:  5'- gGGAGCcACGCUgGCGGcucaGGCCGguGCg -3'
miRNA:   3'- -CCUUGuUGUGGaCGUCa---UCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 16560 0.74 0.371229
Target:  5'- uGGAGCGucacagGCACCUGagcuucuCGGUGGUguCGCAGCg -3'
miRNA:   3'- -CCUUGU------UGUGGAC-------GUCAUCG--GCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 30394 0.77 0.240704
Target:  5'- cGAGCuGCGCCUGCAGc-GCCGCacGGCc -3'
miRNA:   3'- cCUUGuUGUGGACGUCauCGGCG--UCG- -5'
7174 5' -52.6 NC_001900.1 + 6175 0.79 0.173132
Target:  5'- cGAGCAACGCUUcacGCAGUGGCgGCuGCg -3'
miRNA:   3'- cCUUGUUGUGGA---CGUCAUCGgCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 21240 0.8 0.154667
Target:  5'- cGGAACuggcuacaacggAGCGCCUGCGGgAGCUGCAGg -3'
miRNA:   3'- -CCUUG------------UUGUGGACGUCaUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 15262 0.69 0.623352
Target:  5'- cGAAgGACACCUuggucgagGCcGUGGCCGCAc- -3'
miRNA:   3'- cCUUgUUGUGGA--------CGuCAUCGGCGUcg -5'
7174 5' -52.6 NC_001900.1 + 28974 0.69 0.634709
Target:  5'- --uGCucGCGCUUGCAGc-GCCGCAGUu -3'
miRNA:   3'- ccuUGu-UGUGGACGUCauCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 33931 0.69 0.657404
Target:  5'- gGGAGCGugccuCGgCUGguGUGGCCGacgcucgacCAGCc -3'
miRNA:   3'- -CCUUGUu----GUgGACguCAUCGGC---------GUCG- -5'
7174 5' -52.6 NC_001900.1 + 15533 0.66 0.817708
Target:  5'- cGAGCGAauCACCaagcaGCAGUacgaGGCUGCuGCg -3'
miRNA:   3'- cCUUGUU--GUGGa----CGUCA----UCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 18678 0.66 0.817708
Target:  5'- uGGAguacucGCAGCAgCUUGCcgacaAGUGGCUgggggaGCAGCa -3'
miRNA:   3'- -CCU------UGUUGU-GGACG-----UCAUCGG------CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 39800 0.66 0.798149
Target:  5'- cGGcGCucaGCCUcGUAGUAGCUGguGUu -3'
miRNA:   3'- -CCuUGuugUGGA-CGUCAUCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 5959 0.67 0.756909
Target:  5'- uGGGCuGGCugCUGaacCGGccaGGCCGCAGCg -3'
miRNA:   3'- cCUUG-UUGugGAC---GUCa--UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 21139 0.68 0.728889
Target:  5'- uGGGACGAguacuuccucgggauCGCCacgGCAGcGGCC-CAGCg -3'
miRNA:   3'- -CCUUGUU---------------GUGGa--CGUCaUCGGcGUCG- -5'
7174 5' -52.6 NC_001900.1 + 48329 0.68 0.712392
Target:  5'- ---cCAGCGgCUGCGGUAgacguuccagaccGCUGCGGCc -3'
miRNA:   3'- ccuuGUUGUgGACGUCAU-------------CGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 8394 0.68 0.702401
Target:  5'- cGGAGCuGCACCgUGCggacugggAGUGGCa-CGGCa -3'
miRNA:   3'- -CCUUGuUGUGG-ACG--------UCAUCGgcGUCG- -5'
7174 5' -52.6 NC_001900.1 + 8900 0.68 0.68
Target:  5'- cGGcGCGuCACCcGCAcagAGUCGCGGCa -3'
miRNA:   3'- -CCuUGUuGUGGaCGUca-UCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.