miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7174 5' -52.6 NC_001900.1 + 1118 0.74 0.363183
Target:  5'- aGGAcgcaACAGCACCcgGCAaggAGCCGgGGCa -3'
miRNA:   3'- -CCU----UGUUGUGGa-CGUca-UCGGCgUCG- -5'
7174 5' -52.6 NC_001900.1 + 5611 0.67 0.767453
Target:  5'- cGGAGCuGCGCUggGCAGgcaucgguGCCGCcuGGUa -3'
miRNA:   3'- -CCUUGuUGUGGa-CGUCau------CGGCG--UCG- -5'
7174 5' -52.6 NC_001900.1 + 19534 0.67 0.767453
Target:  5'- cGAACuucugGACACC-GCcGUGGCCGUGGg -3'
miRNA:   3'- cCUUG-----UUGUGGaCGuCAUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 1076 0.66 0.827182
Target:  5'- cGGAAgAGgAUCcGcCGGUAGCgGCGGUg -3'
miRNA:   3'- -CCUUgUUgUGGaC-GUCAUCGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 23301 0.7 0.566893
Target:  5'- cGAGuCAACACCacgGCGGUcGGCCcCGGCu -3'
miRNA:   3'- cCUU-GUUGUGGa--CGUCA-UCGGcGUCG- -5'
7174 5' -52.6 NC_001900.1 + 30420 0.7 0.589371
Target:  5'- aGGAACccGCGCCgGUcgauGUAGCUGCAGa -3'
miRNA:   3'- -CCUUGu-UGUGGaCGu---CAUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 676 0.69 0.613137
Target:  5'- uGGAGCugcucuGACGCCcgauuucagccucugGCGGgacaugccacgGGCCGCAGCg -3'
miRNA:   3'- -CCUUG------UUGUGGa--------------CGUCa----------UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 31727 0.69 0.623352
Target:  5'- uGGuucACAGcCACCUgGCGGUuGaCCGCAGUg -3'
miRNA:   3'- -CCu--UGUU-GUGGA-CGUCAuC-GGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 44687 0.69 0.646063
Target:  5'- uGGAACGcgguCcCCUGCGGcagccaggccgcUGGCCGCuGCc -3'
miRNA:   3'- -CCUUGUu---GuGGACGUC------------AUCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 40426 0.67 0.767453
Target:  5'- aGGA---ACACCaGCGGggcGCCGguGCc -3'
miRNA:   3'- -CCUuguUGUGGaCGUCau-CGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 1217 0.68 0.713498
Target:  5'- cGGcAACGcagGCACCgGUgguguacucGGUGGCgGCGGCa -3'
miRNA:   3'- -CC-UUGU---UGUGGaCG---------UCAUCGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 42843 0.69 0.639252
Target:  5'- cGGGAguGCgugugGCCgUGCAGUAGgaucaauccuucaucCCGCAGCc -3'
miRNA:   3'- -CCUUguUG-----UGG-ACGUCAUC---------------GGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 39860 0.71 0.501062
Target:  5'- uGGAGCAcggcggucgguACGCCgugGCGGUAcaucGCgUGCAGCa -3'
miRNA:   3'- -CCUUGU-----------UGUGGa--CGUCAU----CG-GCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 26895 0.67 0.735425
Target:  5'- cGGAACcguCGCCgucgGCGGUcuGGCCuuCAGCc -3'
miRNA:   3'- -CCUUGuu-GUGGa---CGUCA--UCGGc-GUCG- -5'
7174 5' -52.6 NC_001900.1 + 20213 0.71 0.511822
Target:  5'- aGAACGAgACCgGC-GUAGCCacgcuGCAGCu -3'
miRNA:   3'- cCUUGUUgUGGaCGuCAUCGG-----CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 9427 0.69 0.634709
Target:  5'- cGGACGAagaGCUgugGCAGUGGUgGCAGg -3'
miRNA:   3'- cCUUGUUg--UGGa--CGUCAUCGgCGUCg -5'
7174 5' -52.6 NC_001900.1 + 20446 0.67 0.756909
Target:  5'- uGGuGCAACccguuCCUGCGcccugAGCUGCAGUu -3'
miRNA:   3'- -CCuUGUUGu----GGACGUca---UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 10598 0.67 0.767453
Target:  5'- gGGggUgauuccgccuGACGCCUgaGCAGUAuGCaGCGGCc -3'
miRNA:   3'- -CCuuG----------UUGUGGA--CGUCAU-CGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 43088 0.7 0.555733
Target:  5'- aGGAuCAGCcGCUUGCGGccUGGCCGguuCAGCa -3'
miRNA:   3'- -CCUuGUUG-UGGACGUC--AUCGGC---GUCG- -5'
7174 5' -52.6 NC_001900.1 + 37762 0.7 0.589371
Target:  5'- uGAACGAauCACg-GUGGUAGCCGguGCc -3'
miRNA:   3'- cCUUGUU--GUGgaCGUCAUCGGCguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.