miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7174 5' -52.6 NC_001900.1 + 40298 0.66 0.798149
Target:  5'- ----uGugGCCggucgGCAGUgAGCCGCuGCg -3'
miRNA:   3'- ccuugUugUGGa----CGUCA-UCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 1217 0.68 0.713498
Target:  5'- cGGcAACGcagGCACCgGUgguguacucGGUGGCgGCGGCa -3'
miRNA:   3'- -CC-UUGU---UGUGGaCG---------UCAUCGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 1076 0.66 0.827182
Target:  5'- cGGAAgAGgAUCcGcCGGUAGCgGCGGUg -3'
miRNA:   3'- -CCUUgUUgUGGaC-GUCAUCGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 737 0.66 0.788086
Target:  5'- uGGAACGucUACC-GCAGccGCUGguGCg -3'
miRNA:   3'- -CCUUGUu-GUGGaCGUCauCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 41212 0.66 0.798149
Target:  5'- ---cCAGCACCUGCu---GgUGCAGCg -3'
miRNA:   3'- ccuuGUUGUGGACGucauCgGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 36931 0.66 0.808027
Target:  5'- cGAccACAGCACCUucuGGUGGCCuccGUAGCc -3'
miRNA:   3'- cCU--UGUUGUGGAcg-UCAUCGG---CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 11632 0.66 0.788086
Target:  5'- aGGAGCuuCGCCa--GGaGGCCGCuGCu -3'
miRNA:   3'- -CCUUGuuGUGGacgUCaUCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 24787 0.66 0.808027
Target:  5'- gGGGGCGACACCacagccaccuucUcggGCGGUGGCaCGCucaucGCu -3'
miRNA:   3'- -CCUUGUUGUGG------------A---CGUCAUCG-GCGu----CG- -5'
7174 5' -52.6 NC_001900.1 + 37867 0.66 0.808027
Target:  5'- aGAACAGCAgggcgauguCCUugaaguucucucGCgGGUGGCCGUAGUu -3'
miRNA:   3'- cCUUGUUGU---------GGA------------CG-UCAUCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 18678 0.66 0.817708
Target:  5'- uGGAguacucGCAGCAgCUUGCcgacaAGUGGCUgggggaGCAGCa -3'
miRNA:   3'- -CCU------UGUUGU-GGACG-----UCAUCGG------CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 21139 0.68 0.728889
Target:  5'- uGGGACGAguacuuccucgggauCGCCacgGCAGcGGCC-CAGCg -3'
miRNA:   3'- -CCUUGUU---------------GUGGa--CGUCaUCGGcGUCG- -5'
7174 5' -52.6 NC_001900.1 + 48329 0.68 0.712392
Target:  5'- ---cCAGCGgCUGCGGUAgacguuccagaccGCUGCGGCc -3'
miRNA:   3'- ccuuGUUGUgGACGUCAU-------------CGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 33931 0.69 0.657404
Target:  5'- gGGAGCGugccuCGgCUGguGUGGCCGacgcucgacCAGCc -3'
miRNA:   3'- -CCUUGUu----GUgGACguCAUCGGC---------GUCG- -5'
7174 5' -52.6 NC_001900.1 + 28974 0.69 0.634709
Target:  5'- --uGCucGCGCUUGCAGc-GCCGCAGUu -3'
miRNA:   3'- ccuUGu-UGUGGACGUCauCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 15262 0.69 0.623352
Target:  5'- cGAAgGACACCUuggucgagGCcGUGGCCGCAc- -3'
miRNA:   3'- cCUUgUUGUGGA--------CGuCAUCGGCGUcg -5'
7174 5' -52.6 NC_001900.1 + 22752 0.69 0.612003
Target:  5'- cGGAugGACGCCgaaGC-GUGGCUcgcgucugagaaGCGGCu -3'
miRNA:   3'- -CCUugUUGUGGa--CGuCAUCGG------------CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 16011 0.72 0.448889
Target:  5'- cGGuAGCGGCg---GCGGUGGCCaGCAGCa -3'
miRNA:   3'- -CC-UUGUUGuggaCGUCAUCGG-CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 30980 0.81 0.128073
Target:  5'- aGGAACGACgcgauggacgcgccaGCCUGCAccacGGCCGCAGCc -3'
miRNA:   3'- -CCUUGUUG---------------UGGACGUca--UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 20688 0.73 0.437815
Target:  5'- cGGuGACgAGCACCUGCAGUGGCaggucuuCGCuGUc -3'
miRNA:   3'- -CC-UUG-UUGUGGACGUCAUCG-------GCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 38338 1.13 0.000756
Target:  5'- gGGAACAACACCUGCAGUAGCCGCAGCc -3'
miRNA:   3'- -CCUUGUUGUGGACGUCAUCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.