miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7174 5' -52.6 NC_001900.1 + 20446 0.67 0.756909
Target:  5'- uGGuGCAACccguuCCUGCGcccugAGCUGCAGUu -3'
miRNA:   3'- -CCuUGUUGu----GGACGUca---UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 20688 0.73 0.437815
Target:  5'- cGGuGACgAGCACCUGCAGUGGCaggucuuCGCuGUc -3'
miRNA:   3'- -CC-UUG-UUGUGGACGUCAUCG-------GCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 21139 0.68 0.728889
Target:  5'- uGGGACGAguacuuccucgggauCGCCacgGCAGcGGCC-CAGCg -3'
miRNA:   3'- -CCUUGUU---------------GUGGa--CGUCaUCGGcGUCG- -5'
7174 5' -52.6 NC_001900.1 + 21240 0.8 0.154667
Target:  5'- cGGAACuggcuacaacggAGCGCCUGCGGgAGCUGCAGg -3'
miRNA:   3'- -CCUUG------------UUGUGGACGUCaUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 22752 0.69 0.612003
Target:  5'- cGGAugGACGCCgaaGC-GUGGCUcgcgucugagaaGCGGCu -3'
miRNA:   3'- -CCUugUUGUGGa--CGuCAUCGG------------CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 23301 0.7 0.566893
Target:  5'- cGAGuCAACACCacgGCGGUcGGCCcCGGCu -3'
miRNA:   3'- cCUU-GUUGUGGa--CGUCA-UCGGcGUCG- -5'
7174 5' -52.6 NC_001900.1 + 23593 0.73 0.40939
Target:  5'- gGGAGCcACGCUgGCGGcucaGGCCGguGCg -3'
miRNA:   3'- -CCUUGuUGUGGaCGUCa---UCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 24787 0.66 0.808027
Target:  5'- gGGGGCGACACCacagccaccuucUcggGCGGUGGCaCGCucaucGCu -3'
miRNA:   3'- -CCUUGUUGUGG------------A---CGUCAUCG-GCGu----CG- -5'
7174 5' -52.6 NC_001900.1 + 24959 0.69 0.66872
Target:  5'- cGGGuacGCACCU--GGUGGCgGCGGCg -3'
miRNA:   3'- -CCUuguUGUGGAcgUCAUCGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 26380 0.66 0.81386
Target:  5'- cGGGcugacguACGACGCUUGCAcUcgaccgcugcgcugGGuCCGCAGCg -3'
miRNA:   3'- -CCU-------UGUUGUGGACGUcA--------------UC-GGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 26895 0.67 0.735425
Target:  5'- cGGAACcguCGCCgucgGCGGUcuGGCCuuCAGCc -3'
miRNA:   3'- -CCUUGuu-GUGGa---CGUCA--UCGGc-GUCG- -5'
7174 5' -52.6 NC_001900.1 + 28974 0.69 0.634709
Target:  5'- --uGCucGCGCUUGCAGc-GCCGCAGUu -3'
miRNA:   3'- ccuUGu-UGUGGACGUCauCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 30394 0.77 0.240704
Target:  5'- cGAGCuGCGCCUGCAGc-GCCGCacGGCc -3'
miRNA:   3'- cCUUGuUGUGGACGUCauCGGCG--UCG- -5'
7174 5' -52.6 NC_001900.1 + 30420 0.7 0.589371
Target:  5'- aGGAACccGCGCCgGUcgauGUAGCUGCAGa -3'
miRNA:   3'- -CCUUGu-UGUGGaCGu---CAUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 30980 0.81 0.128073
Target:  5'- aGGAACGACgcgauggacgcgccaGCCUGCAccacGGCCGCAGCc -3'
miRNA:   3'- -CCUUGUUG---------------UGGACGUca--UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 31727 0.69 0.623352
Target:  5'- uGGuucACAGcCACCUgGCGGUuGaCCGCAGUg -3'
miRNA:   3'- -CCu--UGUU-GUGGA-CGUCAuC-GGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 33753 0.66 0.824363
Target:  5'- cGAACA-CACCgGgGGUcguggaggcguucgGGCCGUAGUa -3'
miRNA:   3'- cCUUGUuGUGGaCgUCA--------------UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 33931 0.69 0.657404
Target:  5'- gGGAGCGugccuCGgCUGguGUGGCCGacgcucgacCAGCc -3'
miRNA:   3'- -CCUUGUu----GUgGACguCAUCGGC---------GUCG- -5'
7174 5' -52.6 NC_001900.1 + 36931 0.66 0.808027
Target:  5'- cGAccACAGCACCUucuGGUGGCCuccGUAGCc -3'
miRNA:   3'- cCU--UGUUGUGGAcg-UCAUCGG---CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 37762 0.7 0.589371
Target:  5'- uGAACGAauCACg-GUGGUAGCCGguGCc -3'
miRNA:   3'- cCUUGUU--GUGgaCGUCAUCGGCguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.