miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7174 5' -52.6 NC_001900.1 + 26895 0.67 0.735425
Target:  5'- cGGAACcguCGCCgucgGCGGUcuGGCCuuCAGCc -3'
miRNA:   3'- -CCUUGuu-GUGGa---CGUCA--UCGGc-GUCG- -5'
7174 5' -52.6 NC_001900.1 + 26380 0.66 0.81386
Target:  5'- cGGGcugacguACGACGCUUGCAcUcgaccgcugcgcugGGuCCGCAGCg -3'
miRNA:   3'- -CCU-------UGUUGUGGACGUcA--------------UC-GGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 24959 0.69 0.66872
Target:  5'- cGGGuacGCACCU--GGUGGCgGCGGCg -3'
miRNA:   3'- -CCUuguUGUGGAcgUCAUCGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 24787 0.66 0.808027
Target:  5'- gGGGGCGACACCacagccaccuucUcggGCGGUGGCaCGCucaucGCu -3'
miRNA:   3'- -CCUUGUUGUGG------------A---CGUCAUCG-GCGu----CG- -5'
7174 5' -52.6 NC_001900.1 + 23593 0.73 0.40939
Target:  5'- gGGAGCcACGCUgGCGGcucaGGCCGguGCg -3'
miRNA:   3'- -CCUUGuUGUGGaCGUCa---UCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 23301 0.7 0.566893
Target:  5'- cGAGuCAACACCacgGCGGUcGGCCcCGGCu -3'
miRNA:   3'- cCUU-GUUGUGGa--CGUCA-UCGGcGUCG- -5'
7174 5' -52.6 NC_001900.1 + 22752 0.69 0.612003
Target:  5'- cGGAugGACGCCgaaGC-GUGGCUcgcgucugagaaGCGGCu -3'
miRNA:   3'- -CCUugUUGUGGa--CGuCAUCGG------------CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 21240 0.8 0.154667
Target:  5'- cGGAACuggcuacaacggAGCGCCUGCGGgAGCUGCAGg -3'
miRNA:   3'- -CCUUG------------UUGUGGACGUCaUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 21139 0.68 0.728889
Target:  5'- uGGGACGAguacuuccucgggauCGCCacgGCAGcGGCC-CAGCg -3'
miRNA:   3'- -CCUUGUU---------------GUGGa--CGUCaUCGGcGUCG- -5'
7174 5' -52.6 NC_001900.1 + 20688 0.73 0.437815
Target:  5'- cGGuGACgAGCACCUGCAGUGGCaggucuuCGCuGUc -3'
miRNA:   3'- -CC-UUG-UUGUGGACGUCAUCG-------GCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 20446 0.67 0.756909
Target:  5'- uGGuGCAACccguuCCUGCGcccugAGCUGCAGUu -3'
miRNA:   3'- -CCuUGUUGu----GGACGUca---UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 20213 0.71 0.511822
Target:  5'- aGAACGAgACCgGC-GUAGCCacgcuGCAGCu -3'
miRNA:   3'- cCUUGUUgUGGaCGuCAUCGG-----CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 19534 0.67 0.767453
Target:  5'- cGAACuucugGACACC-GCcGUGGCCGUGGg -3'
miRNA:   3'- cCUUG-----UUGUGGaCGuCAUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 18678 0.66 0.817708
Target:  5'- uGGAguacucGCAGCAgCUUGCcgacaAGUGGCUgggggaGCAGCa -3'
miRNA:   3'- -CCU------UGUUGU-GGACG-----UCAUCGG------CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 16560 0.74 0.371229
Target:  5'- uGGAGCGucacagGCACCUGagcuucuCGGUGGUguCGCAGCg -3'
miRNA:   3'- -CCUUGU------UGUGGAC-------GUCAUCG--GCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 16011 0.72 0.448889
Target:  5'- cGGuAGCGGCg---GCGGUGGCCaGCAGCa -3'
miRNA:   3'- -CC-UUGUUGuggaCGUCAUCGG-CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 15533 0.66 0.817708
Target:  5'- cGAGCGAauCACCaagcaGCAGUacgaGGCUGCuGCg -3'
miRNA:   3'- cCUUGUU--GUGGa----CGUCA----UCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 15262 0.69 0.623352
Target:  5'- cGAAgGACACCUuggucgagGCcGUGGCCGCAc- -3'
miRNA:   3'- cCUUgUUGUGGA--------CGuCAUCGGCGUcg -5'
7174 5' -52.6 NC_001900.1 + 11632 0.66 0.788086
Target:  5'- aGGAGCuuCGCCa--GGaGGCCGCuGCu -3'
miRNA:   3'- -CCUUGuuGUGGacgUCaUCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 10598 0.67 0.767453
Target:  5'- gGGggUgauuccgccuGACGCCUgaGCAGUAuGCaGCGGCc -3'
miRNA:   3'- -CCuuG----------UUGUGGA--CGUCAU-CGgCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.