miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7174 5' -52.6 NC_001900.1 + 48329 0.68 0.712392
Target:  5'- ---cCAGCGgCUGCGGUAgacguuccagaccGCUGCGGCc -3'
miRNA:   3'- ccuuGUUGUgGACGUCAU-------------CGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 44687 0.69 0.646063
Target:  5'- uGGAACGcgguCcCCUGCGGcagccaggccgcUGGCCGCuGCc -3'
miRNA:   3'- -CCUUGUu---GuGGACGUC------------AUCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 43088 0.7 0.555733
Target:  5'- aGGAuCAGCcGCUUGCGGccUGGCCGguuCAGCa -3'
miRNA:   3'- -CCUuGUUG-UGGACGUC--AUCGGC---GUCG- -5'
7174 5' -52.6 NC_001900.1 + 42843 0.69 0.639252
Target:  5'- cGGGAguGCgugugGCCgUGCAGUAGgaucaauccuucaucCCGCAGCc -3'
miRNA:   3'- -CCUUguUG-----UGG-ACGUCAUC---------------GGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 41212 0.66 0.798149
Target:  5'- ---cCAGCACCUGCu---GgUGCAGCg -3'
miRNA:   3'- ccuuGUUGUGGACGucauCgGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 40426 0.67 0.767453
Target:  5'- aGGA---ACACCaGCGGggcGCCGguGCc -3'
miRNA:   3'- -CCUuguUGUGGaCGUCau-CGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 40298 0.66 0.798149
Target:  5'- ----uGugGCCggucgGCAGUgAGCCGCuGCg -3'
miRNA:   3'- ccuugUugUGGa----CGUCA-UCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 39860 0.71 0.501062
Target:  5'- uGGAGCAcggcggucgguACGCCgugGCGGUAcaucGCgUGCAGCa -3'
miRNA:   3'- -CCUUGU-----------UGUGGa--CGUCAU----CG-GCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 39800 0.66 0.798149
Target:  5'- cGGcGCucaGCCUcGUAGUAGCUGguGUu -3'
miRNA:   3'- -CCuUGuugUGGA-CGUCAUCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 38338 1.13 0.000756
Target:  5'- gGGAACAACACCUGCAGUAGCCGCAGCc -3'
miRNA:   3'- -CCUUGUUGUGGACGUCAUCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 37867 0.66 0.808027
Target:  5'- aGAACAGCAgggcgauguCCUugaaguucucucGCgGGUGGCCGUAGUu -3'
miRNA:   3'- cCUUGUUGU---------GGA------------CG-UCAUCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 37762 0.7 0.589371
Target:  5'- uGAACGAauCACg-GUGGUAGCCGguGCc -3'
miRNA:   3'- cCUUGUU--GUGgaCGUCAUCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 36931 0.66 0.808027
Target:  5'- cGAccACAGCACCUucuGGUGGCCuccGUAGCc -3'
miRNA:   3'- cCU--UGUUGUGGAcg-UCAUCGG---CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 33931 0.69 0.657404
Target:  5'- gGGAGCGugccuCGgCUGguGUGGCCGacgcucgacCAGCc -3'
miRNA:   3'- -CCUUGUu----GUgGACguCAUCGGC---------GUCG- -5'
7174 5' -52.6 NC_001900.1 + 33753 0.66 0.824363
Target:  5'- cGAACA-CACCgGgGGUcguggaggcguucgGGCCGUAGUa -3'
miRNA:   3'- cCUUGUuGUGGaCgUCA--------------UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 31727 0.69 0.623352
Target:  5'- uGGuucACAGcCACCUgGCGGUuGaCCGCAGUg -3'
miRNA:   3'- -CCu--UGUU-GUGGA-CGUCAuC-GGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 30980 0.81 0.128073
Target:  5'- aGGAACGACgcgauggacgcgccaGCCUGCAccacGGCCGCAGCc -3'
miRNA:   3'- -CCUUGUUG---------------UGGACGUca--UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 30420 0.7 0.589371
Target:  5'- aGGAACccGCGCCgGUcgauGUAGCUGCAGa -3'
miRNA:   3'- -CCUUGu-UGUGGaCGu---CAUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 30394 0.77 0.240704
Target:  5'- cGAGCuGCGCCUGCAGc-GCCGCacGGCc -3'
miRNA:   3'- cCUUGuUGUGGACGUCauCGGCG--UCG- -5'
7174 5' -52.6 NC_001900.1 + 28974 0.69 0.634709
Target:  5'- --uGCucGCGCUUGCAGc-GCCGCAGUu -3'
miRNA:   3'- ccuUGu-UGUGGACGUCauCGGCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.