Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7174 | 5' | -52.6 | NC_001900.1 | + | 9427 | 0.69 | 0.634709 |
Target: 5'- cGGACGAagaGCUgugGCAGUGGUgGCAGg -3' miRNA: 3'- cCUUGUUg--UGGa--CGUCAUCGgCGUCg -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 28974 | 0.69 | 0.634709 |
Target: 5'- --uGCucGCGCUUGCAGc-GCCGCAGUu -3' miRNA: 3'- ccuUGu-UGUGGACGUCauCGGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 42843 | 0.69 | 0.639252 |
Target: 5'- cGGGAguGCgugugGCCgUGCAGUAGgaucaauccuucaucCCGCAGCc -3' miRNA: 3'- -CCUUguUG-----UGG-ACGUCAUC---------------GGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 44687 | 0.69 | 0.646063 |
Target: 5'- uGGAACGcgguCcCCUGCGGcagccaggccgcUGGCCGCuGCc -3' miRNA: 3'- -CCUUGUu---GuGGACGUC------------AUCGGCGuCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 33931 | 0.69 | 0.657404 |
Target: 5'- gGGAGCGugccuCGgCUGguGUGGCCGacgcucgacCAGCc -3' miRNA: 3'- -CCUUGUu----GUgGACguCAUCGGC---------GUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 24959 | 0.69 | 0.66872 |
Target: 5'- cGGGuacGCACCU--GGUGGCgGCGGCg -3' miRNA: 3'- -CCUuguUGUGGAcgUCAUCGgCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 8900 | 0.68 | 0.68 |
Target: 5'- cGGcGCGuCACCcGCAcagAGUCGCGGCa -3' miRNA: 3'- -CCuUGUuGUGGaCGUca-UCGGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 8394 | 0.68 | 0.702401 |
Target: 5'- cGGAGCuGCACCgUGCggacugggAGUGGCa-CGGCa -3' miRNA: 3'- -CCUUGuUGUGG-ACG--------UCAUCGgcGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 48329 | 0.68 | 0.712392 |
Target: 5'- ---cCAGCGgCUGCGGUAgacguuccagaccGCUGCGGCc -3' miRNA: 3'- ccuuGUUGUgGACGUCAU-------------CGGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 1217 | 0.68 | 0.713498 |
Target: 5'- cGGcAACGcagGCACCgGUgguguacucGGUGGCgGCGGCa -3' miRNA: 3'- -CC-UUGU---UGUGGaCG---------UCAUCGgCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 21139 | 0.68 | 0.728889 |
Target: 5'- uGGGACGAguacuuccucgggauCGCCacgGCAGcGGCC-CAGCg -3' miRNA: 3'- -CCUUGUU---------------GUGGa--CGUCaUCGGcGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 26895 | 0.67 | 0.735425 |
Target: 5'- cGGAACcguCGCCgucgGCGGUcuGGCCuuCAGCc -3' miRNA: 3'- -CCUUGuu-GUGGa---CGUCA--UCGGc-GUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 20446 | 0.67 | 0.756909 |
Target: 5'- uGGuGCAACccguuCCUGCGcccugAGCUGCAGUu -3' miRNA: 3'- -CCuUGUUGu----GGACGUca---UCGGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 5959 | 0.67 | 0.756909 |
Target: 5'- uGGGCuGGCugCUGaacCGGccaGGCCGCAGCg -3' miRNA: 3'- cCUUG-UUGugGAC---GUCa--UCGGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 19534 | 0.67 | 0.767453 |
Target: 5'- cGAACuucugGACACC-GCcGUGGCCGUGGg -3' miRNA: 3'- cCUUG-----UUGUGGaCGuCAUCGGCGUCg -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 40426 | 0.67 | 0.767453 |
Target: 5'- aGGA---ACACCaGCGGggcGCCGguGCc -3' miRNA: 3'- -CCUuguUGUGGaCGUCau-CGGCguCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 5611 | 0.67 | 0.767453 |
Target: 5'- cGGAGCuGCGCUggGCAGgcaucgguGCCGCcuGGUa -3' miRNA: 3'- -CCUUGuUGUGGa-CGUCau------CGGCG--UCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 10598 | 0.67 | 0.767453 |
Target: 5'- gGGggUgauuccgccuGACGCCUgaGCAGUAuGCaGCGGCc -3' miRNA: 3'- -CCuuG----------UUGUGGA--CGUCAU-CGgCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 11632 | 0.66 | 0.788086 |
Target: 5'- aGGAGCuuCGCCa--GGaGGCCGCuGCu -3' miRNA: 3'- -CCUUGuuGUGGacgUCaUCGGCGuCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 737 | 0.66 | 0.788086 |
Target: 5'- uGGAACGucUACC-GCAGccGCUGguGCg -3' miRNA: 3'- -CCUUGUu-GUGGaCGUCauCGGCguCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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