miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 26461 1.11 0.000563
Target:  5'- uGGCCGAAGCUGAAAUCACCGCCGCCGa -3'
miRNA:   3'- -CCGGCUUCGACUUUAGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 5428 0.85 0.042166
Target:  5'- -cCCGAAGCUGAAGUCGCCGUacgCGCCGc -3'
miRNA:   3'- ccGGCUUCGACUUUAGUGGCG---GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 28915 0.79 0.12218
Target:  5'- aGGCCGcgcAGacgGAAGUCGCCGUCGCCa -3'
miRNA:   3'- -CCGGCu--UCga-CUUUAGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 25056 0.74 0.22841
Target:  5'- cGGCCGc-GCUGGuagCACCuguGCCGCCGu -3'
miRNA:   3'- -CCGGCuuCGACUuuaGUGG---CGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 44895 0.73 0.273637
Target:  5'- uGCCGGuagacgacgcgAGUuguuUGggGUCACCGCCgGCCGc -3'
miRNA:   3'- cCGGCU-----------UCG----ACuuUAGUGGCGG-CGGC- -5'
7194 5' -55.9 NC_001900.1 + 42568 0.73 0.280654
Target:  5'- gGGCCG-AGCUGggGg-ACCGC-GCCGu -3'
miRNA:   3'- -CCGGCuUCGACuuUagUGGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 12953 0.73 0.287814
Target:  5'- uGUCGAGGCUGAGuacgcguUCACUGCaacgaCGCCGa -3'
miRNA:   3'- cCGGCUUCGACUUu------AGUGGCG-----GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 35746 0.72 0.325766
Target:  5'- uGGCCGuAGCcaGggGUgAacaCGCCGCCGa -3'
miRNA:   3'- -CCGGCuUCGa-CuuUAgUg--GCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 8760 0.72 0.325766
Target:  5'- cGGCCGcAGCggc--UCACUGCCGaCCGg -3'
miRNA:   3'- -CCGGCuUCGacuuuAGUGGCGGC-GGC- -5'
7194 5' -55.9 NC_001900.1 + 36691 0.72 0.341955
Target:  5'- cGCUGGAGCUGAu----CCGCCGCg- -3'
miRNA:   3'- cCGGCUUCGACUuuaguGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 15963 0.71 0.393929
Target:  5'- aGCCcaGAAGCUGA--UCGCCG-CGCUGg -3'
miRNA:   3'- cCGG--CUUCGACUuuAGUGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 47888 0.7 0.403076
Target:  5'- cGGCCGcuuccGGCggcc--CACCGCCGCCu -3'
miRNA:   3'- -CCGGCu----UCGacuuuaGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 6447 0.7 0.412356
Target:  5'- cGCUGAGGCUGAGGUCGa-GCgCGUCa -3'
miRNA:   3'- cCGGCUUCGACUUUAGUggCG-GCGGc -5'
7194 5' -55.9 NC_001900.1 + 24088 0.7 0.421767
Target:  5'- gGGaCCGuugcGGCUG----CGCCGCCGCCa -3'
miRNA:   3'- -CC-GGCu---UCGACuuuaGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 33040 0.7 0.431305
Target:  5'- -cCCGAGacuggugcuGCUGGc--CACCGCCGCCGc -3'
miRNA:   3'- ccGGCUU---------CGACUuuaGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 14706 0.7 0.431305
Target:  5'- -cCCGAAGCUGcacUCGCUGCCGgUGg -3'
miRNA:   3'- ccGGCUUCGACuuuAGUGGCGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 11787 0.7 0.431305
Target:  5'- cGGCUgcaGAAGCUGGAGaccUCGCuUGCCGCa- -3'
miRNA:   3'- -CCGG---CUUCGACUUU---AGUG-GCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 10919 0.7 0.431305
Target:  5'- aGGCCGAcucuccucaAGCUGcgGUCACCaaGCUGaCCu -3'
miRNA:   3'- -CCGGCU---------UCGACuuUAGUGG--CGGC-GGc -5'
7194 5' -55.9 NC_001900.1 + 44441 0.7 0.431306
Target:  5'- aGCCGAAGCgucUGAuuuacagucaGAUC-CCGuuGCCGc -3'
miRNA:   3'- cCGGCUUCG---ACU----------UUAGuGGCggCGGC- -5'
7194 5' -55.9 NC_001900.1 + 48671 0.69 0.450755
Target:  5'- gGGCUGucgGGCUGucGUCACgcugucgcuguCGUCGCCGg -3'
miRNA:   3'- -CCGGCu--UCGACuuUAGUG-----------GCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.