miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 723 0.67 0.575987
Target:  5'- gGGCCGcAGCggucugGAAcGUCuACCGCaGCCGc -3'
miRNA:   3'- -CCGGCuUCGa-----CUU-UAG-UGGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 4092 0.67 0.608807
Target:  5'- aGGCCGAcaAGaucccGAAcCGCUGCCGCUGg -3'
miRNA:   3'- -CCGGCU--UCgac--UUUaGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 5428 0.85 0.042166
Target:  5'- -cCCGAAGCUGAAGUCGCCGUacgCGCCGc -3'
miRNA:   3'- ccGGCUUCGACUUUAGUGGCG---GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 5608 0.67 0.597835
Target:  5'- uGUCGGAGCUGcGcugggcaggcAUCGgUGCCGCCu -3'
miRNA:   3'- cCGGCUUCGACuU----------UAGUgGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 6033 0.68 0.554325
Target:  5'- aGCUGGAGCgaGuuGUC-CgCGCCGCCa -3'
miRNA:   3'- cCGGCUUCGa-CuuUAGuG-GCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 6447 0.7 0.412356
Target:  5'- cGCUGAGGCUGAGGUCGa-GCgCGUCa -3'
miRNA:   3'- cCGGCUUCGACUUUAGUggCG-GCGGc -5'
7194 5' -55.9 NC_001900.1 + 8320 0.66 0.652802
Target:  5'- cGGCgcucgCGgcGCUGAcgacAUCGCUGaCCGCUGg -3'
miRNA:   3'- -CCG-----GCuuCGACUu---UAGUGGC-GGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 8466 0.69 0.491037
Target:  5'- gGGCUGggGCUGAuGUCugC-CUGgCGu -3'
miRNA:   3'- -CCGGCuuCGACUuUAGugGcGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 8478 0.69 0.501369
Target:  5'- cGGCCGAGGacucCUGGcuGUCACCGCaggaguggaacCGCUGc -3'
miRNA:   3'- -CCGGCUUC----GACUu-UAGUGGCG-----------GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 8760 0.72 0.325766
Target:  5'- cGGCCGcAGCggc--UCACUGCCGaCCGg -3'
miRNA:   3'- -CCGGCuUCGacuuuAGUGGCGGC-GGC- -5'
7194 5' -55.9 NC_001900.1 + 9331 0.67 0.575988
Target:  5'- uGGCUGAcccggagcuggcGGCUGAucUCAUCG-CGCUGg -3'
miRNA:   3'- -CCGGCU------------UCGACUuuAGUGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 10453 0.68 0.551095
Target:  5'- cGCCGAGcGCgagGAGAUgCGCCGCUgggacgaggaagagGCCGc -3'
miRNA:   3'- cCGGCUU-CGa--CUUUA-GUGGCGG--------------CGGC- -5'
7194 5' -55.9 NC_001900.1 + 10634 0.68 0.532908
Target:  5'- cGGCCcAGGCcGuGAUCACUGCggggcuCGCCGg -3'
miRNA:   3'- -CCGGcUUCGaCuUUAGUGGCG------GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 10919 0.7 0.431305
Target:  5'- aGGCCGAcucuccucaAGCUGcgGUCACCaaGCUGaCCu -3'
miRNA:   3'- -CCGGCU---------UCGACuuUAGUGG--CGGC-GGc -5'
7194 5' -55.9 NC_001900.1 + 11787 0.7 0.431305
Target:  5'- cGGCUgcaGAAGCUGGAGaccUCGCuUGCCGCa- -3'
miRNA:   3'- -CCGG---CUUCGACUUU---AGUG-GCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 12953 0.73 0.287814
Target:  5'- uGUCGAGGCUGAGuacgcguUCACUGCaacgaCGCCGa -3'
miRNA:   3'- cCGGCUUCGACUUu------AGUGGCG-----GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 14003 0.68 0.522311
Target:  5'- uGGCCGAGGCgGGucaguuGUCGa-GCCGCUa -3'
miRNA:   3'- -CCGGCUUCGaCUu-----UAGUggCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 14706 0.7 0.431305
Target:  5'- -cCCGAAGCUGcacUCGCUGCCGgUGg -3'
miRNA:   3'- ccGGCUUCGACuuuAGUGGCGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 14998 0.68 0.551095
Target:  5'- cGGCCGAggaguucagccaugAGUUGcGGAUC-CCGgUGCCGg -3'
miRNA:   3'- -CCGGCU--------------UCGAC-UUUAGuGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 15032 0.69 0.460659
Target:  5'- cGCCGAAGCaGg---CACCGCUGCa- -3'
miRNA:   3'- cCGGCUUCGaCuuuaGUGGCGGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.