miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 12953 0.73 0.287814
Target:  5'- uGUCGAGGCUGAGuacgcguUCACUGCaacgaCGCCGa -3'
miRNA:   3'- cCGGCUUCGACUUu------AGUGGCG-----GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 10453 0.68 0.551095
Target:  5'- cGCCGAGcGCgagGAGAUgCGCCGCUgggacgaggaagagGCCGc -3'
miRNA:   3'- cCGGCUU-CGa--CUUUA-GUGGCGG--------------CGGC- -5'
7194 5' -55.9 NC_001900.1 + 48898 0.67 0.575987
Target:  5'- aGCUGGAGCUGAGGccggcauucgCAUCGUCGCa- -3'
miRNA:   3'- cCGGCUUCGACUUUa---------GUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 27899 0.66 0.685631
Target:  5'- aGuCCGAucGCUGG----GCCGCUGCCGu -3'
miRNA:   3'- cC-GGCUu-CGACUuuagUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 6447 0.7 0.412356
Target:  5'- cGCUGAGGCUGAGGUCGa-GCgCGUCa -3'
miRNA:   3'- cCGGCUUCGACUUUAGUggCG-GCGGc -5'
7194 5' -55.9 NC_001900.1 + 10919 0.7 0.431305
Target:  5'- aGGCCGAcucuccucaAGCUGcgGUCACCaaGCUGaCCu -3'
miRNA:   3'- -CCGGCU---------UCGACuuUAGUGG--CGGC-GGc -5'
7194 5' -55.9 NC_001900.1 + 33040 0.7 0.431305
Target:  5'- -cCCGAGacuggugcuGCUGGc--CACCGCCGCCGc -3'
miRNA:   3'- ccGGCUU---------CGACUuuaGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 14706 0.7 0.431305
Target:  5'- -cCCGAAGCUGcacUCGCUGCCGgUGg -3'
miRNA:   3'- ccGGCUUCGACuuuAGUGGCGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 15032 0.69 0.460659
Target:  5'- cGCCGAAGCaGg---CACCGCUGCa- -3'
miRNA:   3'- cCGGCUUCGaCuuuaGUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 31298 0.68 0.543582
Target:  5'- -aCCGAAGUUGAucguggcguuGUCGgUGCCGCCc -3'
miRNA:   3'- ccGGCUUCGACUu---------UAGUgGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 43484 0.69 0.501369
Target:  5'- cGGCCGGccAGCUcGGug-CGCCGCCuGCUc -3'
miRNA:   3'- -CCGGCU--UCGA-CUuuaGUGGCGG-CGGc -5'
7194 5' -55.9 NC_001900.1 + 15778 0.69 0.460659
Target:  5'- cGUCG-AGCUGAA---GCCGCUGCUGa -3'
miRNA:   3'- cCGGCuUCGACUUuagUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 35746 0.72 0.325766
Target:  5'- uGGCCGuAGCcaGggGUgAacaCGCCGCCGa -3'
miRNA:   3'- -CCGGCuUCGa-CuuUAgUg--GCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 10634 0.68 0.532908
Target:  5'- cGGCCcAGGCcGuGAUCACUGCggggcuCGCCGg -3'
miRNA:   3'- -CCGGcUUCGaCuUUAGUGGCG------GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 36691 0.72 0.341955
Target:  5'- cGCUGGAGCUGAu----CCGCCGCg- -3'
miRNA:   3'- cCGGCUUCGACUuuaguGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 48671 0.69 0.450755
Target:  5'- gGGCUGucgGGCUGucGUCACgcugucgcuguCGUCGCCGg -3'
miRNA:   3'- -CCGGCu--UCGACuuUAGUG-----------GCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 34698 0.68 0.532908
Target:  5'- aGCCGAccGGC-GAA--CACCGCCuGCCa -3'
miRNA:   3'- cCGGCU--UCGaCUUuaGUGGCGG-CGGc -5'
7194 5' -55.9 NC_001900.1 + 6033 0.68 0.554325
Target:  5'- aGCUGGAGCgaGuuGUC-CgCGCCGCCa -3'
miRNA:   3'- cCGGCUUCGa-CuuUAGuG-GCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 15963 0.71 0.393929
Target:  5'- aGCCcaGAAGCUGA--UCGCCG-CGCUGg -3'
miRNA:   3'- cCGG--CUUCGACUuuAGUGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 11787 0.7 0.431305
Target:  5'- cGGCUgcaGAAGCUGGAGaccUCGCuUGCCGCa- -3'
miRNA:   3'- -CCGG---CUUCGACUUU---AGUG-GCGGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.