miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 27899 0.66 0.685631
Target:  5'- aGuCCGAucGCUGG----GCCGCUGCCGu -3'
miRNA:   3'- cC-GGCUu-CGACUuuagUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 6033 0.68 0.554325
Target:  5'- aGCUGGAGCgaGuuGUC-CgCGCCGCCa -3'
miRNA:   3'- cCGGCUUCGa-CuuUAGuG-GCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 43069 0.67 0.597835
Target:  5'- aGGCCGAucauGGUUGcccaGGAUCAgCCGCUugcggccugGCCGg -3'
miRNA:   3'- -CCGGCU----UCGAC----UUUAGU-GGCGG---------CGGC- -5'
7194 5' -55.9 NC_001900.1 + 15963 0.71 0.393929
Target:  5'- aGCCcaGAAGCUGA--UCGCCG-CGCUGg -3'
miRNA:   3'- cCGG--CUUCGACUuuAGUGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 26882 0.66 0.663777
Target:  5'- aGGUCGcaacGGCcgGAAccGUCGCCGUCGgCGg -3'
miRNA:   3'- -CCGGCu---UCGa-CUU--UAGUGGCGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 36691 0.72 0.341955
Target:  5'- cGCUGGAGCUGAu----CCGCCGCg- -3'
miRNA:   3'- cCGGCUUCGACUuuaguGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 35746 0.72 0.325766
Target:  5'- uGGCCGuAGCcaGggGUgAacaCGCCGCCGa -3'
miRNA:   3'- -CCGGCuUCGa-CuuUAgUg--GCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 48898 0.67 0.575987
Target:  5'- aGCUGGAGCUGAGGccggcauucgCAUCGUCGCa- -3'
miRNA:   3'- cCGGCUUCGACUUUa---------GUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 8320 0.66 0.652802
Target:  5'- cGGCgcucgCGgcGCUGAcgacAUCGCUGaCCGCUGg -3'
miRNA:   3'- -CCG-----GCuuCGACUu---UAGUGGC-GGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 42764 0.69 0.470677
Target:  5'- cGCCGAccaGGUUGAGAgCGCCagcgacgauGUCGCCGa -3'
miRNA:   3'- cCGGCU---UCGACUUUaGUGG---------CGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 32963 0.69 0.491037
Target:  5'- aGUCGGAGa--GAAUCGCC-CCGCCGa -3'
miRNA:   3'- cCGGCUUCgacUUUAGUGGcGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 9331 0.67 0.575988
Target:  5'- uGGCUGAcccggagcuggcGGCUGAucUCAUCG-CGCUGg -3'
miRNA:   3'- -CCGGCU------------UCGACUuuAGUGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 23869 0.67 0.608807
Target:  5'- uGCUGggGUUGucGAUCAUCGUCGgCa -3'
miRNA:   3'- cCGGCuuCGACu-UUAGUGGCGGCgGc -5'
7194 5' -55.9 NC_001900.1 + 36237 0.67 0.6165
Target:  5'- cGCCGAucuggccccagaugAGCUGGgagaAGUCACCcaugaaGCCGaCCGu -3'
miRNA:   3'- cCGGCU--------------UCGACU----UUAGUGG------CGGC-GGC- -5'
7194 5' -55.9 NC_001900.1 + 45612 0.67 0.619799
Target:  5'- uGGCCGggGU----GUCGgUGCCGuuGa -3'
miRNA:   3'- -CCGGCuuCGacuuUAGUgGCGGCggC- -5'
7194 5' -55.9 NC_001900.1 + 14003 0.68 0.522311
Target:  5'- uGGCCGAGGCgGGucaguuGUCGa-GCCGCUa -3'
miRNA:   3'- -CCGGCUUCGaCUu-----UAGUggCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 22155 0.68 0.522311
Target:  5'- -aCUGAGGCUGAAGgccagACCGCCGaCGg -3'
miRNA:   3'- ccGGCUUCGACUUUag---UGGCGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 45243 0.69 0.501369
Target:  5'- aGCCGuuGaaGAAGUUcuugACCGCCGUCGa -3'
miRNA:   3'- cCGGCuuCgaCUUUAG----UGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 8466 0.69 0.491037
Target:  5'- gGGCUGggGCUGAuGUCugC-CUGgCGu -3'
miRNA:   3'- -CCGGCuuCGACUuUAGugGcGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 45764 0.69 0.491037
Target:  5'- gGGUCGAGGUggGGGAUCGaccagcggaagUCGCgGCCGg -3'
miRNA:   3'- -CCGGCUUCGa-CUUUAGU-----------GGCGgCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.