miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 40300 0.67 0.586892
Target:  5'- uGGCCGGucGGCagUGAGc-CGCUGCgGCCGu -3'
miRNA:   3'- -CCGGCU--UCG--ACUUuaGUGGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 32658 0.67 0.586892
Target:  5'- cGGUCGAAGCUGAGGUaGCaguuCCgGCCa -3'
miRNA:   3'- -CCGGCUUCGACUUUAgUGgc--GG-CGGc -5'
7194 5' -55.9 NC_001900.1 + 723 0.67 0.575987
Target:  5'- gGGCCGcAGCggucugGAAcGUCuACCGCaGCCGc -3'
miRNA:   3'- -CCGGCuUCGa-----CUU-UAG-UGGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 48898 0.67 0.575987
Target:  5'- aGCUGGAGCUGAGGccggcauucgCAUCGUCGCa- -3'
miRNA:   3'- cCGGCUUCGACUUUa---------GUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 6033 0.68 0.554325
Target:  5'- aGCUGGAGCgaGuuGUC-CgCGCCGCCa -3'
miRNA:   3'- cCGGCUUCGa-CuuUAGuG-GCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 10453 0.68 0.551095
Target:  5'- cGCCGAGcGCgagGAGAUgCGCCGCUgggacgaggaagagGCCGc -3'
miRNA:   3'- cCGGCUU-CGa--CUUUA-GUGGCGG--------------CGGC- -5'
7194 5' -55.9 NC_001900.1 + 31298 0.68 0.543582
Target:  5'- -aCCGAAGUUGAucguggcguuGUCGgUGCCGCCc -3'
miRNA:   3'- ccGGCUUCGACUu---------UAGUgGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 10634 0.68 0.532908
Target:  5'- cGGCCcAGGCcGuGAUCACUGCggggcuCGCCGg -3'
miRNA:   3'- -CCGGcUUCGaCuUUAGUGGCG------GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 42568 0.73 0.280654
Target:  5'- gGGCCG-AGCUGggGg-ACCGC-GCCGu -3'
miRNA:   3'- -CCGGCuUCGACuuUagUGGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 26461 1.11 0.000563
Target:  5'- uGGCCGAAGCUGAAAUCACCGCCGCCGa -3'
miRNA:   3'- -CCGGCUUCGACUUUAGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 5428 0.85 0.042166
Target:  5'- -cCCGAAGCUGAAGUCGCCGUacgCGCCGc -3'
miRNA:   3'- ccGGCUUCGACUUUAGUGGCG---GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 28915 0.79 0.12218
Target:  5'- aGGCCGcgcAGacgGAAGUCGCCGUCGCCa -3'
miRNA:   3'- -CCGGCu--UCga-CUUUAGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 25056 0.74 0.22841
Target:  5'- cGGCCGc-GCUGGuagCACCuguGCCGCCGu -3'
miRNA:   3'- -CCGGCuuCGACUuuaGUGG---CGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 44895 0.73 0.273637
Target:  5'- uGCCGGuagacgacgcgAGUuguuUGggGUCACCGCCgGCCGc -3'
miRNA:   3'- cCGGCU-----------UCG----ACuuUAGUGGCGG-CGGC- -5'
7194 5' -55.9 NC_001900.1 + 27552 0.66 0.649505
Target:  5'- gGGCuCGGgucuuguggaucugGGCUGcGAUgGCCGCgaaCGCCGa -3'
miRNA:   3'- -CCG-GCU--------------UCGACuUUAgUGGCG---GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 15553 0.67 0.565129
Target:  5'- aGuaCGAGGCUGcugcGAUCaaaGCCGUCGCUGa -3'
miRNA:   3'- -CcgGCUUCGACu---UUAG---UGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 19691 0.67 0.572725
Target:  5'- uGGCCGAGgagauggguccgguGCUGAucggCACCGaCC-CCGa -3'
miRNA:   3'- -CCGGCUU--------------CGACUuua-GUGGC-GGcGGC- -5'
7194 5' -55.9 NC_001900.1 + 9331 0.67 0.575988
Target:  5'- uGGCUGAcccggagcuggcGGCUGAucUCAUCG-CGCUGg -3'
miRNA:   3'- -CCGGCU------------UCGACUuuAGUGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 23869 0.67 0.608807
Target:  5'- uGCUGggGUUGucGAUCAUCGUCGgCa -3'
miRNA:   3'- cCGGCuuCGACu-UUAGUGGCGGCgGc -5'
7194 5' -55.9 NC_001900.1 + 36237 0.67 0.6165
Target:  5'- cGCCGAucuggccccagaugAGCUGGgagaAGUCACCcaugaaGCCGaCCGu -3'
miRNA:   3'- cCGGCU--------------UCGACU----UUAGUGG------CGGC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.