Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7194 | 5' | -55.9 | NC_001900.1 | + | 15778 | 0.69 | 0.460659 |
Target: 5'- cGUCG-AGCUGAA---GCCGCUGCUGa -3' miRNA: 3'- cCGGCuUCGACUUuagUGGCGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 15032 | 0.69 | 0.460659 |
Target: 5'- cGCCGAAGCaGg---CACCGCUGCa- -3' miRNA: 3'- cCGGCUUCGaCuuuaGUGGCGGCGgc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 42764 | 0.69 | 0.470677 |
Target: 5'- cGCCGAccaGGUUGAGAgCGCCagcgacgauGUCGCCGa -3' miRNA: 3'- cCGGCU---UCGACUUUaGUGG---------CGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 8466 | 0.69 | 0.491037 |
Target: 5'- gGGCUGggGCUGAuGUCugC-CUGgCGu -3' miRNA: 3'- -CCGGCuuCGACUuUAGugGcGGCgGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 45764 | 0.69 | 0.491037 |
Target: 5'- gGGUCGAGGUggGGGAUCGaccagcggaagUCGCgGCCGg -3' miRNA: 3'- -CCGGCUUCGa-CUUUAGU-----------GGCGgCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 32963 | 0.69 | 0.491037 |
Target: 5'- aGUCGGAGa--GAAUCGCC-CCGCCGa -3' miRNA: 3'- cCGGCUUCgacUUUAGUGGcGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 8478 | 0.69 | 0.501369 |
Target: 5'- cGGCCGAGGacucCUGGcuGUCACCGCaggaguggaacCGCUGc -3' miRNA: 3'- -CCGGCUUC----GACUu-UAGUGGCG-----------GCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 43484 | 0.69 | 0.501369 |
Target: 5'- cGGCCGGccAGCUcGGug-CGCCGCCuGCUc -3' miRNA: 3'- -CCGGCU--UCGA-CUuuaGUGGCGG-CGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 45243 | 0.69 | 0.501369 |
Target: 5'- aGCCGuuGaaGAAGUUcuugACCGCCGUCGa -3' miRNA: 3'- cCGGCuuCgaCUUUAG----UGGCGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 22155 | 0.68 | 0.522311 |
Target: 5'- -aCUGAGGCUGAAGgccagACCGCCGaCGg -3' miRNA: 3'- ccGGCUUCGACUUUag---UGGCGGCgGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 14003 | 0.68 | 0.522311 |
Target: 5'- uGGCCGAGGCgGGucaguuGUCGa-GCCGCUa -3' miRNA: 3'- -CCGGCUUCGaCUu-----UAGUggCGGCGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 33884 | 0.68 | 0.522311 |
Target: 5'- uGCCaGGAGCccuugaccucGGAAUCGCCGCCcucgaaGCCGa -3' miRNA: 3'- cCGG-CUUCGa---------CUUUAGUGGCGG------CGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 10634 | 0.68 | 0.532908 |
Target: 5'- cGGCCcAGGCcGuGAUCACUGCggggcuCGCCGg -3' miRNA: 3'- -CCGGcUUCGaCuUUAGUGGCG------GCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 34698 | 0.68 | 0.532908 |
Target: 5'- aGCCGAccGGC-GAA--CACCGCCuGCCa -3' miRNA: 3'- cCGGCU--UCGaCUUuaGUGGCGG-CGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 36029 | 0.68 | 0.532909 |
Target: 5'- cGGUgGAugucaaguuaGGCUcagcccUCGCCGCCGCCGc -3' miRNA: 3'- -CCGgCU----------UCGAcuuu--AGUGGCGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 31298 | 0.68 | 0.543582 |
Target: 5'- -aCCGAAGUUGAucguggcguuGUCGgUGCCGCCc -3' miRNA: 3'- ccGGCUUCGACUu---------UAGUgGCGGCGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 14998 | 0.68 | 0.551095 |
Target: 5'- cGGCCGAggaguucagccaugAGUUGcGGAUC-CCGgUGCCGg -3' miRNA: 3'- -CCGGCU--------------UCGAC-UUUAGuGGCgGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 10453 | 0.68 | 0.551095 |
Target: 5'- cGCCGAGcGCgagGAGAUgCGCCGCUgggacgaggaagagGCCGc -3' miRNA: 3'- cCGGCUU-CGa--CUUUA-GUGGCGG--------------CGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 25199 | 0.68 | 0.554325 |
Target: 5'- uGGCCGAGGUUGcgGUUACgGgCCugGCCu -3' miRNA: 3'- -CCGGCUUCGACuuUAGUGgC-GG--CGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 38577 | 0.68 | 0.554325 |
Target: 5'- aGGCCGAGGCc-----CAUCGCgGCCu -3' miRNA: 3'- -CCGGCUUCGacuuuaGUGGCGgCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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