Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7194 | 5' | -55.9 | NC_001900.1 | + | 25199 | 0.68 | 0.554325 |
Target: 5'- uGGCCGAGGUUGcgGUUACgGgCCugGCCu -3' miRNA: 3'- -CCGGCUUCGACuuUAGUGgC-GG--CGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 6033 | 0.68 | 0.554325 |
Target: 5'- aGCUGGAGCgaGuuGUC-CgCGCCGCCa -3' miRNA: 3'- cCGGCUUCGa-CuuUAGuG-GCGGCGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 15553 | 0.67 | 0.565129 |
Target: 5'- aGuaCGAGGCUGcugcGAUCaaaGCCGUCGCUGa -3' miRNA: 3'- -CcgGCUUCGACu---UUAG---UGGCGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 19691 | 0.67 | 0.572725 |
Target: 5'- uGGCCGAGgagauggguccgguGCUGAucggCACCGaCC-CCGa -3' miRNA: 3'- -CCGGCUU--------------CGACUuua-GUGGC-GGcGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 48898 | 0.67 | 0.575987 |
Target: 5'- aGCUGGAGCUGAGGccggcauucgCAUCGUCGCa- -3' miRNA: 3'- cCGGCUUCGACUUUa---------GUGGCGGCGgc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 723 | 0.67 | 0.575987 |
Target: 5'- gGGCCGcAGCggucugGAAcGUCuACCGCaGCCGc -3' miRNA: 3'- -CCGGCuUCGa-----CUU-UAG-UGGCGgCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 9331 | 0.67 | 0.575988 |
Target: 5'- uGGCUGAcccggagcuggcGGCUGAucUCAUCG-CGCUGg -3' miRNA: 3'- -CCGGCU------------UCGACUuuAGUGGCgGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 32658 | 0.67 | 0.586892 |
Target: 5'- cGGUCGAAGCUGAGGUaGCaguuCCgGCCa -3' miRNA: 3'- -CCGGCUUCGACUUUAgUGgc--GG-CGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 40300 | 0.67 | 0.586892 |
Target: 5'- uGGCCGGucGGCagUGAGc-CGCUGCgGCCGu -3' miRNA: 3'- -CCGGCU--UCG--ACUUuaGUGGCGgCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 5608 | 0.67 | 0.597835 |
Target: 5'- uGUCGGAGCUGcGcugggcaggcAUCGgUGCCGCCu -3' miRNA: 3'- cCGGCUUCGACuU----------UAGUgGCGGCGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 43069 | 0.67 | 0.597835 |
Target: 5'- aGGCCGAucauGGUUGcccaGGAUCAgCCGCUugcggccugGCCGg -3' miRNA: 3'- -CCGGCU----UCGAC----UUUAGU-GGCGG---------CGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 4092 | 0.67 | 0.608807 |
Target: 5'- aGGCCGAcaAGaucccGAAcCGCUGCCGCUGg -3' miRNA: 3'- -CCGGCU--UCgac--UUUaGUGGCGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 23869 | 0.67 | 0.608807 |
Target: 5'- uGCUGggGUUGucGAUCAUCGUCGgCa -3' miRNA: 3'- cCGGCuuCGACu-UUAGUGGCGGCgGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 36237 | 0.67 | 0.6165 |
Target: 5'- cGCCGAucuggccccagaugAGCUGGgagaAGUCACCcaugaaGCCGaCCGu -3' miRNA: 3'- cCGGCU--------------UCGACU----UUAGUGG------CGGC-GGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 45612 | 0.67 | 0.619799 |
Target: 5'- uGGCCGggGU----GUCGgUGCCGuuGa -3' miRNA: 3'- -CCGGCuuCGacuuUAGUgGCGGCggC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 40107 | 0.67 | 0.619799 |
Target: 5'- uGCCGAAGCaccGGGUUGCCGUCGUg- -3' miRNA: 3'- cCGGCUUCGac-UUUAGUGGCGGCGgc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 25138 | 0.66 | 0.630802 |
Target: 5'- -aCCGAGaccGCUGggGUCGuuGUCGuuGa -3' miRNA: 3'- ccGGCUU---CGACuuUAGUggCGGCggC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 27552 | 0.66 | 0.649505 |
Target: 5'- gGGCuCGGgucuuguggaucugGGCUGcGAUgGCCGCgaaCGCCGa -3' miRNA: 3'- -CCG-GCU--------------UCGACuUUAgUGGCG---GCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 35558 | 0.66 | 0.652802 |
Target: 5'- aGCCuGGAGCUGGuagguGUaCGCC-CCGUCGg -3' miRNA: 3'- cCGG-CUUCGACUu----UA-GUGGcGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 8320 | 0.66 | 0.652802 |
Target: 5'- cGGCgcucgCGgcGCUGAcgacAUCGCUGaCCGCUGg -3' miRNA: 3'- -CCG-----GCuuCGACUu---UAGUGGC-GGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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