miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 20369 0.66 0.674724
Target:  5'- cGGCCaGGAGCUGcccuGGUaCAUCGCCGa-- -3'
miRNA:   3'- -CCGG-CUUCGACu---UUA-GUGGCGGCggc -5'
7194 5' -55.9 NC_001900.1 + 24139 0.68 0.554325
Target:  5'- gGGgUG-AGCUGccuagCGCCGCCGUCGu -3'
miRNA:   3'- -CCgGCuUCGACuuua-GUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 38577 0.68 0.554325
Target:  5'- aGGCCGAGGCc-----CAUCGCgGCCu -3'
miRNA:   3'- -CCGGCUUCGacuuuaGUGGCGgCGGc -5'
7194 5' -55.9 NC_001900.1 + 22155 0.68 0.522311
Target:  5'- -aCUGAGGCUGAAGgccagACCGCCGaCGg -3'
miRNA:   3'- ccGGCUUCGACUUUag---UGGCGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 45243 0.69 0.501369
Target:  5'- aGCCGuuGaaGAAGUUcuugACCGCCGUCGa -3'
miRNA:   3'- cCGGCuuCgaCUUUAG----UGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 8466 0.69 0.491037
Target:  5'- gGGCUGggGCUGAuGUCugC-CUGgCGu -3'
miRNA:   3'- -CCGGCuuCGACUuUAGugGcGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 45764 0.69 0.491037
Target:  5'- gGGUCGAGGUggGGGAUCGaccagcggaagUCGCgGCCGg -3'
miRNA:   3'- -CCGGCUUCGa-CUUUAGU-----------GGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 32963 0.69 0.491037
Target:  5'- aGUCGGAGa--GAAUCGCC-CCGCCGa -3'
miRNA:   3'- cCGGCUUCgacUUUAGUGGcGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 42764 0.69 0.470677
Target:  5'- cGCCGAccaGGUUGAGAgCGCCagcgacgauGUCGCCGa -3'
miRNA:   3'- cCGGCU---UCGACUUUaGUGG---------CGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 33884 0.68 0.522311
Target:  5'- uGCCaGGAGCccuugaccucGGAAUCGCCGCCcucgaaGCCGa -3'
miRNA:   3'- cCGG-CUUCGa---------CUUUAGUGGCGG------CGGC- -5'
7194 5' -55.9 NC_001900.1 + 36029 0.68 0.532909
Target:  5'- cGGUgGAugucaaguuaGGCUcagcccUCGCCGCCGCCGc -3'
miRNA:   3'- -CCGgCU----------UCGAcuuu--AGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 14998 0.68 0.551095
Target:  5'- cGGCCGAggaguucagccaugAGUUGcGGAUC-CCGgUGCCGg -3'
miRNA:   3'- -CCGGCU--------------UCGAC-UUUAGuGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 8760 0.72 0.325766
Target:  5'- cGGCCGcAGCggc--UCACUGCCGaCCGg -3'
miRNA:   3'- -CCGGCuUCGacuuuAGUGGCGGC-GGC- -5'
7194 5' -55.9 NC_001900.1 + 42568 0.73 0.280654
Target:  5'- gGGCCG-AGCUGggGg-ACCGC-GCCGu -3'
miRNA:   3'- -CCGGCuUCGACuuUagUGGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 44895 0.73 0.273637
Target:  5'- uGCCGGuagacgacgcgAGUuguuUGggGUCACCGCCgGCCGc -3'
miRNA:   3'- cCGGCU-----------UCG----ACuuUAGUGGCGG-CGGC- -5'
7194 5' -55.9 NC_001900.1 + 25056 0.74 0.22841
Target:  5'- cGGCCGc-GCUGGuagCACCuguGCCGCCGu -3'
miRNA:   3'- -CCGGCuuCGACUuuaGUGG---CGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 28915 0.79 0.12218
Target:  5'- aGGCCGcgcAGacgGAAGUCGCCGUCGCCa -3'
miRNA:   3'- -CCGGCu--UCga-CUUUAGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 5428 0.85 0.042166
Target:  5'- -cCCGAAGCUGAAGUCGCCGUacgCGCCGc -3'
miRNA:   3'- ccGGCUUCGACUUUAGUGGCG---GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 26461 1.11 0.000563
Target:  5'- uGGCCGAAGCUGAAAUCACCGCCGCCGa -3'
miRNA:   3'- -CCGGCUUCGACUUUAGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 25199 0.68 0.554325
Target:  5'- uGGCCGAGGUUGcgGUUACgGgCCugGCCu -3'
miRNA:   3'- -CCGGCUUCGACuuUAGUGgC-GG--CGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.