Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7194 | 5' | -55.9 | NC_001900.1 | + | 45612 | 0.67 | 0.619799 |
Target: 5'- uGGCCGggGU----GUCGgUGCCGuuGa -3' miRNA: 3'- -CCGGCuuCGacuuUAGUgGCGGCggC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 40107 | 0.67 | 0.619799 |
Target: 5'- uGCCGAAGCaccGGGUUGCCGUCGUg- -3' miRNA: 3'- cCGGCUUCGac-UUUAGUGGCGGCGgc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 25138 | 0.66 | 0.630802 |
Target: 5'- -aCCGAGaccGCUGggGUCGuuGUCGuuGa -3' miRNA: 3'- ccGGCUU---CGACuuUAGUggCGGCggC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 24139 | 0.68 | 0.554325 |
Target: 5'- gGGgUG-AGCUGccuagCGCCGCCGUCGu -3' miRNA: 3'- -CCgGCuUCGACuuua-GUGGCGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 30390 | 0.66 | 0.652802 |
Target: 5'- uGGUCG-AGCUGcgccugCAgCGCCGCaCGg -3' miRNA: 3'- -CCGGCuUCGACuuua--GUgGCGGCG-GC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 8320 | 0.66 | 0.652802 |
Target: 5'- cGGCgcucgCGgcGCUGAcgacAUCGCUGaCCGCUGg -3' miRNA: 3'- -CCG-----GCuuCGACUu---UAGUGGC-GGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 35558 | 0.66 | 0.652802 |
Target: 5'- aGCCuGGAGCUGGuagguGUaCGCC-CCGUCGg -3' miRNA: 3'- cCGG-CUUCGACUu----UA-GUGGcGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 25763 | 0.66 | 0.657195 |
Target: 5'- gGGCCGAccGccgugguguugacucGCUcGAAGUCAUCcCCGCCa -3' miRNA: 3'- -CCGGCU--U---------------CGA-CUUUAGUGGcGGCGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 17616 | 0.66 | 0.674724 |
Target: 5'- uGGCCGAucggauccaGGUagUGAucgCGCUGCCGCg- -3' miRNA: 3'- -CCGGCU---------UCG--ACUuuaGUGGCGGCGgc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 20369 | 0.66 | 0.674724 |
Target: 5'- cGGCCaGGAGCUGcccuGGUaCAUCGCCGa-- -3' miRNA: 3'- -CCGG-CUUCGACu---UUA-GUGGCGGCggc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 27924 | 0.66 | 0.685631 |
Target: 5'- cGGCCagGAAGCUGguGUCGgUGCC-UCGu -3' miRNA: 3'- -CCGG--CUUCGACuuUAGUgGCGGcGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 45243 | 0.69 | 0.501369 |
Target: 5'- aGCCGuuGaaGAAGUUcuugACCGCCGUCGa -3' miRNA: 3'- cCGGCuuCgaCUUUAG----UGGCGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 8760 | 0.72 | 0.325766 |
Target: 5'- cGGCCGcAGCggc--UCACUGCCGaCCGg -3' miRNA: 3'- -CCGGCuUCGacuuuAGUGGCGGC-GGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 47888 | 0.7 | 0.403076 |
Target: 5'- cGGCCGcuuccGGCggcc--CACCGCCGCCu -3' miRNA: 3'- -CCGGCu----UCGacuuuaGUGGCGGCGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 24088 | 0.7 | 0.421767 |
Target: 5'- gGGaCCGuugcGGCUG----CGCCGCCGCCa -3' miRNA: 3'- -CC-GGCu---UCGACuuuaGUGGCGGCGGc -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 44441 | 0.7 | 0.431306 |
Target: 5'- aGCCGAAGCgucUGAuuuacagucaGAUC-CCGuuGCCGc -3' miRNA: 3'- cCGGCUUCG---ACU----------UUAGuGGCggCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 42764 | 0.69 | 0.470677 |
Target: 5'- cGCCGAccaGGUUGAGAgCGCCagcgacgauGUCGCCGa -3' miRNA: 3'- cCGGCU---UCGACUUUaGUGG---------CGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 32963 | 0.69 | 0.491037 |
Target: 5'- aGUCGGAGa--GAAUCGCC-CCGCCGa -3' miRNA: 3'- cCGGCUUCgacUUUAGUGGcGGCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 45764 | 0.69 | 0.491037 |
Target: 5'- gGGUCGAGGUggGGGAUCGaccagcggaagUCGCgGCCGg -3' miRNA: 3'- -CCGGCUUCGa-CUUUAGU-----------GGCGgCGGC- -5' |
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7194 | 5' | -55.9 | NC_001900.1 | + | 8466 | 0.69 | 0.491037 |
Target: 5'- gGGCUGggGCUGAuGUCugC-CUGgCGu -3' miRNA: 3'- -CCGGCuuCGACUuUAGugGcGGCgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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