miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 45612 0.67 0.619799
Target:  5'- uGGCCGggGU----GUCGgUGCCGuuGa -3'
miRNA:   3'- -CCGGCuuCGacuuUAGUgGCGGCggC- -5'
7194 5' -55.9 NC_001900.1 + 40107 0.67 0.619799
Target:  5'- uGCCGAAGCaccGGGUUGCCGUCGUg- -3'
miRNA:   3'- cCGGCUUCGac-UUUAGUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 25138 0.66 0.630802
Target:  5'- -aCCGAGaccGCUGggGUCGuuGUCGuuGa -3'
miRNA:   3'- ccGGCUU---CGACuuUAGUggCGGCggC- -5'
7194 5' -55.9 NC_001900.1 + 24139 0.68 0.554325
Target:  5'- gGGgUG-AGCUGccuagCGCCGCCGUCGu -3'
miRNA:   3'- -CCgGCuUCGACuuua-GUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 30390 0.66 0.652802
Target:  5'- uGGUCG-AGCUGcgccugCAgCGCCGCaCGg -3'
miRNA:   3'- -CCGGCuUCGACuuua--GUgGCGGCG-GC- -5'
7194 5' -55.9 NC_001900.1 + 8320 0.66 0.652802
Target:  5'- cGGCgcucgCGgcGCUGAcgacAUCGCUGaCCGCUGg -3'
miRNA:   3'- -CCG-----GCuuCGACUu---UAGUGGC-GGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 35558 0.66 0.652802
Target:  5'- aGCCuGGAGCUGGuagguGUaCGCC-CCGUCGg -3'
miRNA:   3'- cCGG-CUUCGACUu----UA-GUGGcGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 25763 0.66 0.657195
Target:  5'- gGGCCGAccGccgugguguugacucGCUcGAAGUCAUCcCCGCCa -3'
miRNA:   3'- -CCGGCU--U---------------CGA-CUUUAGUGGcGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 17616 0.66 0.674724
Target:  5'- uGGCCGAucggauccaGGUagUGAucgCGCUGCCGCg- -3'
miRNA:   3'- -CCGGCU---------UCG--ACUuuaGUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 20369 0.66 0.674724
Target:  5'- cGGCCaGGAGCUGcccuGGUaCAUCGCCGa-- -3'
miRNA:   3'- -CCGG-CUUCGACu---UUA-GUGGCGGCggc -5'
7194 5' -55.9 NC_001900.1 + 27924 0.66 0.685631
Target:  5'- cGGCCagGAAGCUGguGUCGgUGCC-UCGu -3'
miRNA:   3'- -CCGG--CUUCGACuuUAGUgGCGGcGGC- -5'
7194 5' -55.9 NC_001900.1 + 45243 0.69 0.501369
Target:  5'- aGCCGuuGaaGAAGUUcuugACCGCCGUCGa -3'
miRNA:   3'- cCGGCuuCgaCUUUAG----UGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 8760 0.72 0.325766
Target:  5'- cGGCCGcAGCggc--UCACUGCCGaCCGg -3'
miRNA:   3'- -CCGGCuUCGacuuuAGUGGCGGC-GGC- -5'
7194 5' -55.9 NC_001900.1 + 47888 0.7 0.403076
Target:  5'- cGGCCGcuuccGGCggcc--CACCGCCGCCu -3'
miRNA:   3'- -CCGGCu----UCGacuuuaGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 24088 0.7 0.421767
Target:  5'- gGGaCCGuugcGGCUG----CGCCGCCGCCa -3'
miRNA:   3'- -CC-GGCu---UCGACuuuaGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 44441 0.7 0.431306
Target:  5'- aGCCGAAGCgucUGAuuuacagucaGAUC-CCGuuGCCGc -3'
miRNA:   3'- cCGGCUUCG---ACU----------UUAGuGGCggCGGC- -5'
7194 5' -55.9 NC_001900.1 + 42764 0.69 0.470677
Target:  5'- cGCCGAccaGGUUGAGAgCGCCagcgacgauGUCGCCGa -3'
miRNA:   3'- cCGGCU---UCGACUUUaGUGG---------CGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 32963 0.69 0.491037
Target:  5'- aGUCGGAGa--GAAUCGCC-CCGCCGa -3'
miRNA:   3'- cCGGCUUCgacUUUAGUGGcGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 45764 0.69 0.491037
Target:  5'- gGGUCGAGGUggGGGAUCGaccagcggaagUCGCgGCCGg -3'
miRNA:   3'- -CCGGCUUCGa-CUUUAGU-----------GGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 8466 0.69 0.491037
Target:  5'- gGGCUGggGCUGAuGUCugC-CUGgCGu -3'
miRNA:   3'- -CCGGCuuCGACUuUAGugGcGGCgGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.