miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 43484 0.69 0.501369
Target:  5'- cGGCCGGccAGCUcGGug-CGCCGCCuGCUc -3'
miRNA:   3'- -CCGGCU--UCGA-CUuuaGUGGCGG-CGGc -5'
7194 5' -55.9 NC_001900.1 + 8478 0.69 0.501369
Target:  5'- cGGCCGAGGacucCUGGcuGUCACCGCaggaguggaacCGCUGc -3'
miRNA:   3'- -CCGGCUUC----GACUu-UAGUGGCG-----------GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 32963 0.69 0.491037
Target:  5'- aGUCGGAGa--GAAUCGCC-CCGCCGa -3'
miRNA:   3'- cCGGCUUCgacUUUAGUGGcGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 8466 0.69 0.491037
Target:  5'- gGGCUGggGCUGAuGUCugC-CUGgCGu -3'
miRNA:   3'- -CCGGCuuCGACUuUAGugGcGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 45764 0.69 0.491037
Target:  5'- gGGUCGAGGUggGGGAUCGaccagcggaagUCGCgGCCGg -3'
miRNA:   3'- -CCGGCUUCGa-CUUUAGU-----------GGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 42764 0.69 0.470677
Target:  5'- cGCCGAccaGGUUGAGAgCGCCagcgacgauGUCGCCGa -3'
miRNA:   3'- cCGGCU---UCGACUUUaGUGG---------CGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 15032 0.69 0.460659
Target:  5'- cGCCGAAGCaGg---CACCGCUGCa- -3'
miRNA:   3'- cCGGCUUCGaCuuuaGUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 15778 0.69 0.460659
Target:  5'- cGUCG-AGCUGAA---GCCGCUGCUGa -3'
miRNA:   3'- cCGGCuUCGACUUuagUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 48671 0.69 0.450755
Target:  5'- gGGCUGucgGGCUGucGUCACgcugucgcuguCGUCGCCGg -3'
miRNA:   3'- -CCGGCu--UCGACuuUAGUG-----------GCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 44441 0.7 0.431306
Target:  5'- aGCCGAAGCgucUGAuuuacagucaGAUC-CCGuuGCCGc -3'
miRNA:   3'- cCGGCUUCG---ACU----------UUAGuGGCggCGGC- -5'
7194 5' -55.9 NC_001900.1 + 11787 0.7 0.431305
Target:  5'- cGGCUgcaGAAGCUGGAGaccUCGCuUGCCGCa- -3'
miRNA:   3'- -CCGG---CUUCGACUUU---AGUG-GCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 14706 0.7 0.431305
Target:  5'- -cCCGAAGCUGcacUCGCUGCCGgUGg -3'
miRNA:   3'- ccGGCUUCGACuuuAGUGGCGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 33040 0.7 0.431305
Target:  5'- -cCCGAGacuggugcuGCUGGc--CACCGCCGCCGc -3'
miRNA:   3'- ccGGCUU---------CGACUuuaGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 10919 0.7 0.431305
Target:  5'- aGGCCGAcucuccucaAGCUGcgGUCACCaaGCUGaCCu -3'
miRNA:   3'- -CCGGCU---------UCGACuuUAGUGG--CGGC-GGc -5'
7194 5' -55.9 NC_001900.1 + 24088 0.7 0.421767
Target:  5'- gGGaCCGuugcGGCUG----CGCCGCCGCCa -3'
miRNA:   3'- -CC-GGCu---UCGACuuuaGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 6447 0.7 0.412356
Target:  5'- cGCUGAGGCUGAGGUCGa-GCgCGUCa -3'
miRNA:   3'- cCGGCUUCGACUUUAGUggCG-GCGGc -5'
7194 5' -55.9 NC_001900.1 + 47888 0.7 0.403076
Target:  5'- cGGCCGcuuccGGCggcc--CACCGCCGCCu -3'
miRNA:   3'- -CCGGCu----UCGacuuuaGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 15963 0.71 0.393929
Target:  5'- aGCCcaGAAGCUGA--UCGCCG-CGCUGg -3'
miRNA:   3'- cCGG--CUUCGACUuuAGUGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 36691 0.72 0.341955
Target:  5'- cGCUGGAGCUGAu----CCGCCGCg- -3'
miRNA:   3'- cCGGCUUCGACUuuaguGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 35746 0.72 0.325766
Target:  5'- uGGCCGuAGCcaGggGUgAacaCGCCGCCGa -3'
miRNA:   3'- -CCGGCuUCGa-CuuUAgUg--GCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.