miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 14998 0.68 0.551095
Target:  5'- cGGCCGAggaguucagccaugAGUUGcGGAUC-CCGgUGCCGg -3'
miRNA:   3'- -CCGGCU--------------UCGAC-UUUAGuGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 36237 0.67 0.6165
Target:  5'- cGCCGAucuggccccagaugAGCUGGgagaAGUCACCcaugaaGCCGaCCGu -3'
miRNA:   3'- cCGGCU--------------UCGACU----UUAGUGG------CGGC-GGC- -5'
7194 5' -55.9 NC_001900.1 + 23869 0.67 0.608807
Target:  5'- uGCUGggGUUGucGAUCAUCGUCGgCa -3'
miRNA:   3'- cCGGCuuCGACu-UUAGUGGCGGCgGc -5'
7194 5' -55.9 NC_001900.1 + 9331 0.67 0.575988
Target:  5'- uGGCUGAcccggagcuggcGGCUGAucUCAUCG-CGCUGg -3'
miRNA:   3'- -CCGGCU------------UCGACUuuAGUGGCgGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 19691 0.67 0.572725
Target:  5'- uGGCCGAGgagauggguccgguGCUGAucggCACCGaCC-CCGa -3'
miRNA:   3'- -CCGGCUU--------------CGACUuua-GUGGC-GGcGGC- -5'
7194 5' -55.9 NC_001900.1 + 15553 0.67 0.565129
Target:  5'- aGuaCGAGGCUGcugcGAUCaaaGCCGUCGCUGa -3'
miRNA:   3'- -CcgGCUUCGACu---UUAG---UGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 24139 0.68 0.554325
Target:  5'- gGGgUG-AGCUGccuagCGCCGCCGUCGu -3'
miRNA:   3'- -CCgGCuUCGACuuua-GUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 38577 0.68 0.554325
Target:  5'- aGGCCGAGGCc-----CAUCGCgGCCu -3'
miRNA:   3'- -CCGGCUUCGacuuuaGUGGCGgCGGc -5'
7194 5' -55.9 NC_001900.1 + 25199 0.68 0.554325
Target:  5'- uGGCCGAGGUUGcgGUUACgGgCCugGCCu -3'
miRNA:   3'- -CCGGCUUCGACuuUAGUGgC-GG--CGGc -5'
7194 5' -55.9 NC_001900.1 + 45612 0.67 0.619799
Target:  5'- uGGCCGggGU----GUCGgUGCCGuuGa -3'
miRNA:   3'- -CCGGCuuCGacuuUAGUgGCGGCggC- -5'
7194 5' -55.9 NC_001900.1 + 40107 0.67 0.619799
Target:  5'- uGCCGAAGCaccGGGUUGCCGUCGUg- -3'
miRNA:   3'- cCGGCUUCGac-UUUAGUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 25138 0.66 0.630802
Target:  5'- -aCCGAGaccGCUGggGUCGuuGUCGuuGa -3'
miRNA:   3'- ccGGCUU---CGACuuUAGUggCGGCggC- -5'
7194 5' -55.9 NC_001900.1 + 27924 0.66 0.685631
Target:  5'- cGGCCagGAAGCUGguGUCGgUGCC-UCGu -3'
miRNA:   3'- -CCGG--CUUCGACuuUAGUgGCGGcGGC- -5'
7194 5' -55.9 NC_001900.1 + 20369 0.66 0.674724
Target:  5'- cGGCCaGGAGCUGcccuGGUaCAUCGCCGa-- -3'
miRNA:   3'- -CCGG-CUUCGACu---UUA-GUGGCGGCggc -5'
7194 5' -55.9 NC_001900.1 + 17616 0.66 0.674724
Target:  5'- uGGCCGAucggauccaGGUagUGAucgCGCUGCCGCg- -3'
miRNA:   3'- -CCGGCU---------UCG--ACUuuaGUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 25763 0.66 0.657195
Target:  5'- gGGCCGAccGccgugguguugacucGCUcGAAGUCAUCcCCGCCa -3'
miRNA:   3'- -CCGGCU--U---------------CGA-CUUUAGUGGcGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 35558 0.66 0.652802
Target:  5'- aGCCuGGAGCUGGuagguGUaCGCC-CCGUCGg -3'
miRNA:   3'- cCGG-CUUCGACUu----UA-GUGGcGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 8320 0.66 0.652802
Target:  5'- cGGCgcucgCGgcGCUGAcgacAUCGCUGaCCGCUGg -3'
miRNA:   3'- -CCG-----GCuuCGACUu---UAGUGGC-GGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 30390 0.66 0.652802
Target:  5'- uGGUCG-AGCUGcgccugCAgCGCCGCaCGg -3'
miRNA:   3'- -CCGGCuUCGACuuua--GUgGCGGCG-GC- -5'
7194 5' -55.9 NC_001900.1 + 27552 0.66 0.649505
Target:  5'- gGGCuCGGgucuuguggaucugGGCUGcGAUgGCCGCgaaCGCCGa -3'
miRNA:   3'- -CCG-GCU--------------UCGACuUUAgUGGCG---GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.