miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 48898 0.67 0.575987
Target:  5'- aGCUGGAGCUGAGGccggcauucgCAUCGUCGCa- -3'
miRNA:   3'- cCGGCUUCGACUUUa---------GUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 48671 0.69 0.450755
Target:  5'- gGGCUGucgGGCUGucGUCACgcugucgcuguCGUCGCCGg -3'
miRNA:   3'- -CCGGCu--UCGACuuUAGUG-----------GCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 47888 0.7 0.403076
Target:  5'- cGGCCGcuuccGGCggcc--CACCGCCGCCu -3'
miRNA:   3'- -CCGGCu----UCGacuuuaGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 47817 0.66 0.685631
Target:  5'- cGCCGccAGCUc----CGCUGCCGCCGc -3'
miRNA:   3'- cCGGCu-UCGAcuuuaGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 45764 0.69 0.491037
Target:  5'- gGGUCGAGGUggGGGAUCGaccagcggaagUCGCgGCCGg -3'
miRNA:   3'- -CCGGCUUCGa-CUUUAGU-----------GGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 45612 0.67 0.619799
Target:  5'- uGGCCGggGU----GUCGgUGCCGuuGa -3'
miRNA:   3'- -CCGGCuuCGacuuUAGUgGCGGCggC- -5'
7194 5' -55.9 NC_001900.1 + 45243 0.69 0.501369
Target:  5'- aGCCGuuGaaGAAGUUcuugACCGCCGUCGa -3'
miRNA:   3'- cCGGCuuCgaCUUUAG----UGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 44895 0.73 0.273637
Target:  5'- uGCCGGuagacgacgcgAGUuguuUGggGUCACCGCCgGCCGc -3'
miRNA:   3'- cCGGCU-----------UCG----ACuuUAGUGGCGG-CGGC- -5'
7194 5' -55.9 NC_001900.1 + 44441 0.7 0.431306
Target:  5'- aGCCGAAGCgucUGAuuuacagucaGAUC-CCGuuGCCGc -3'
miRNA:   3'- cCGGCUUCG---ACU----------UUAGuGGCggCGGC- -5'
7194 5' -55.9 NC_001900.1 + 43484 0.69 0.501369
Target:  5'- cGGCCGGccAGCUcGGug-CGCCGCCuGCUc -3'
miRNA:   3'- -CCGGCU--UCGA-CUuuaGUGGCGG-CGGc -5'
7194 5' -55.9 NC_001900.1 + 43069 0.67 0.597835
Target:  5'- aGGCCGAucauGGUUGcccaGGAUCAgCCGCUugcggccugGCCGg -3'
miRNA:   3'- -CCGGCU----UCGAC----UUUAGU-GGCGG---------CGGC- -5'
7194 5' -55.9 NC_001900.1 + 42764 0.69 0.470677
Target:  5'- cGCCGAccaGGUUGAGAgCGCCagcgacgauGUCGCCGa -3'
miRNA:   3'- cCGGCU---UCGACUUUaGUGG---------CGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 42568 0.73 0.280654
Target:  5'- gGGCCG-AGCUGggGg-ACCGC-GCCGu -3'
miRNA:   3'- -CCGGCuUCGACuuUagUGGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 40300 0.67 0.586892
Target:  5'- uGGCCGGucGGCagUGAGc-CGCUGCgGCCGu -3'
miRNA:   3'- -CCGGCU--UCG--ACUUuaGUGGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 40107 0.67 0.619799
Target:  5'- uGCCGAAGCaccGGGUUGCCGUCGUg- -3'
miRNA:   3'- cCGGCUUCGac-UUUAGUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 38577 0.68 0.554325
Target:  5'- aGGCCGAGGCc-----CAUCGCgGCCu -3'
miRNA:   3'- -CCGGCUUCGacuuuaGUGGCGgCGGc -5'
7194 5' -55.9 NC_001900.1 + 36691 0.72 0.341955
Target:  5'- cGCUGGAGCUGAu----CCGCCGCg- -3'
miRNA:   3'- cCGGCUUCGACUuuaguGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 36237 0.67 0.6165
Target:  5'- cGCCGAucuggccccagaugAGCUGGgagaAGUCACCcaugaaGCCGaCCGu -3'
miRNA:   3'- cCGGCU--------------UCGACU----UUAGUGG------CGGC-GGC- -5'
7194 5' -55.9 NC_001900.1 + 36029 0.68 0.532909
Target:  5'- cGGUgGAugucaaguuaGGCUcagcccUCGCCGCCGCCGc -3'
miRNA:   3'- -CCGgCU----------UCGAcuuu--AGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 35746 0.72 0.325766
Target:  5'- uGGCCGuAGCcaGggGUgAacaCGCCGCCGa -3'
miRNA:   3'- -CCGGCuUCGa-CuuUAgUg--GCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.