miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 35558 0.66 0.652802
Target:  5'- aGCCuGGAGCUGGuagguGUaCGCC-CCGUCGg -3'
miRNA:   3'- cCGG-CUUCGACUu----UA-GUGGcGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 34698 0.68 0.532908
Target:  5'- aGCCGAccGGC-GAA--CACCGCCuGCCa -3'
miRNA:   3'- cCGGCU--UCGaCUUuaGUGGCGG-CGGc -5'
7194 5' -55.9 NC_001900.1 + 33884 0.68 0.522311
Target:  5'- uGCCaGGAGCccuugaccucGGAAUCGCCGCCcucgaaGCCGa -3'
miRNA:   3'- cCGG-CUUCGa---------CUUUAGUGGCGG------CGGC- -5'
7194 5' -55.9 NC_001900.1 + 33040 0.7 0.431305
Target:  5'- -cCCGAGacuggugcuGCUGGc--CACCGCCGCCGc -3'
miRNA:   3'- ccGGCUU---------CGACUuuaGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 32963 0.69 0.491037
Target:  5'- aGUCGGAGa--GAAUCGCC-CCGCCGa -3'
miRNA:   3'- cCGGCUUCgacUUUAGUGGcGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 32658 0.67 0.586892
Target:  5'- cGGUCGAAGCUGAGGUaGCaguuCCgGCCa -3'
miRNA:   3'- -CCGGCUUCGACUUUAgUGgc--GG-CGGc -5'
7194 5' -55.9 NC_001900.1 + 31298 0.68 0.543582
Target:  5'- -aCCGAAGUUGAucguggcguuGUCGgUGCCGCCc -3'
miRNA:   3'- ccGGCUUCGACUu---------UAGUgGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 30390 0.66 0.652802
Target:  5'- uGGUCG-AGCUGcgccugCAgCGCCGCaCGg -3'
miRNA:   3'- -CCGGCuUCGACuuua--GUgGCGGCG-GC- -5'
7194 5' -55.9 NC_001900.1 + 28915 0.79 0.12218
Target:  5'- aGGCCGcgcAGacgGAAGUCGCCGUCGCCa -3'
miRNA:   3'- -CCGGCu--UCga-CUUUAGUGGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 27924 0.66 0.685631
Target:  5'- cGGCCagGAAGCUGguGUCGgUGCC-UCGu -3'
miRNA:   3'- -CCGG--CUUCGACuuUAGUgGCGGcGGC- -5'
7194 5' -55.9 NC_001900.1 + 27899 0.66 0.685631
Target:  5'- aGuCCGAucGCUGG----GCCGCUGCCGu -3'
miRNA:   3'- cC-GGCUu-CGACUuuagUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 27552 0.66 0.649505
Target:  5'- gGGCuCGGgucuuguggaucugGGCUGcGAUgGCCGCgaaCGCCGa -3'
miRNA:   3'- -CCG-GCU--------------UCGACuUUAgUGGCG---GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 26882 0.66 0.663777
Target:  5'- aGGUCGcaacGGCcgGAAccGUCGCCGUCGgCGg -3'
miRNA:   3'- -CCGGCu---UCGa-CUU--UAGUGGCGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 26461 1.11 0.000563
Target:  5'- uGGCCGAAGCUGAAAUCACCGCCGCCGa -3'
miRNA:   3'- -CCGGCUUCGACUUUAGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 25763 0.66 0.657195
Target:  5'- gGGCCGAccGccgugguguugacucGCUcGAAGUCAUCcCCGCCa -3'
miRNA:   3'- -CCGGCU--U---------------CGA-CUUUAGUGGcGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 25199 0.68 0.554325
Target:  5'- uGGCCGAGGUUGcgGUUACgGgCCugGCCu -3'
miRNA:   3'- -CCGGCUUCGACuuUAGUGgC-GG--CGGc -5'
7194 5' -55.9 NC_001900.1 + 25138 0.66 0.630802
Target:  5'- -aCCGAGaccGCUGggGUCGuuGUCGuuGa -3'
miRNA:   3'- ccGGCUU---CGACuuUAGUggCGGCggC- -5'
7194 5' -55.9 NC_001900.1 + 25056 0.74 0.22841
Target:  5'- cGGCCGc-GCUGGuagCACCuguGCCGCCGu -3'
miRNA:   3'- -CCGGCuuCGACUuuaGUGG---CGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 24139 0.68 0.554325
Target:  5'- gGGgUG-AGCUGccuagCGCCGCCGUCGu -3'
miRNA:   3'- -CCgGCuUCGACuuua-GUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 24088 0.7 0.421767
Target:  5'- gGGaCCGuugcGGCUG----CGCCGCCGCCa -3'
miRNA:   3'- -CC-GGCu---UCGACuuuaGUGGCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.