miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7198 3' -55.6 NC_001900.1 + 48329 0.74 0.26539
Target:  5'- cUCACCGGuCCAAGuuGGUGAUgacAUUCACu -3'
miRNA:   3'- -GGUGGCC-GGUUUggCCACUA---UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 47884 0.7 0.458814
Target:  5'- gCC-CCGGCCGcuuCCGGcg--GCCCACc -3'
miRNA:   3'- -GGuGGCCGGUuu-GGCCacuaUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 47794 0.67 0.606879
Target:  5'- gCUGCCGGUCGAACCaccGA-ACCCGCc -3'
miRNA:   3'- -GGUGGCCGGUUUGGccaCUaUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 47458 0.67 0.589333
Target:  5'- gCCACCGGCCGAgaaGCCgaccucgaacagcgaGGaGAUccgGCCCGa -3'
miRNA:   3'- -GGUGGCCGGUU---UGG---------------CCaCUA---UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 47335 0.72 0.33221
Target:  5'- cCCACUGGgCAGACCGaugcuguucGcGAUGCCUACg -3'
miRNA:   3'- -GGUGGCCgGUUUGGC---------CaCUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 47006 0.66 0.705458
Target:  5'- gCugCGGUCuGAACCcuGGUGuagGCCCAg -3'
miRNA:   3'- gGugGCCGG-UUUGG--CCACua-UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 46001 0.86 0.039477
Target:  5'- cCCGCCGGUCGggUCGGcgGGUGCCCGCu -3'
miRNA:   3'- -GGUGGCCGGUuuGGCCa-CUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 45655 0.68 0.563198
Target:  5'- aCCugUGGCC---CCGGUGAUGuaCACc -3'
miRNA:   3'- -GGugGCCGGuuuGGCCACUAUggGUG- -5'
7198 3' -55.6 NC_001900.1 + 45565 0.66 0.650903
Target:  5'- gUCACCGGCCAGACCcugcgGGUuCUCGg -3'
miRNA:   3'- -GGUGGCCGGUUUGGcca--CUAuGGGUg -5'
7198 3' -55.6 NC_001900.1 + 45429 0.78 0.139595
Target:  5'- uCCACCGGCCAuGCCGG-GGUaggGCUCAa -3'
miRNA:   3'- -GGUGGCCGGUuUGGCCaCUA---UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 45114 0.66 0.683773
Target:  5'- -gACCGGCCGcguucGCCGuGgaggcgGGUACCgGCg -3'
miRNA:   3'- ggUGGCCGGUu----UGGC-Ca-----CUAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 44926 0.69 0.467813
Target:  5'- aCCGCCGGCCGcuucGCCGGUcGGcagaugaaccaacUGCCaGCg -3'
miRNA:   3'- -GGUGGCCGGUu---UGGCCA-CU-------------AUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 44005 0.67 0.617876
Target:  5'- uUCACCgGGCC--ACCGGgGAUGUCCAUc -3'
miRNA:   3'- -GGUGG-CCGGuuUGGCCaCUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 43483 0.71 0.383212
Target:  5'- uCgGCCGGCCAGcUCGGUGcgccGCCUGCu -3'
miRNA:   3'- -GgUGGCCGGUUuGGCCACua--UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 43098 0.66 0.648703
Target:  5'- gCUugCGGCCuGGCCGGUucagcagccaGCCCAg -3'
miRNA:   3'- -GGugGCCGGuUUGGCCAcua-------UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 42739 0.7 0.439155
Target:  5'- aCAgCGGCCGuGGCCGGUGcgGCUgCGCc -3'
miRNA:   3'- gGUgGCCGGU-UUGGCCACuaUGG-GUG- -5'
7198 3' -55.6 NC_001900.1 + 42562 0.68 0.563198
Target:  5'- gCCAgCgGGCCGAGCUGG-GggACCgCGCc -3'
miRNA:   3'- -GGU-GgCCGGUUUGGCCaCuaUGG-GUG- -5'
7198 3' -55.6 NC_001900.1 + 42518 0.67 0.617876
Target:  5'- aCgGCUGGCUguAGGCCGGUugGAUGCCg-- -3'
miRNA:   3'- -GgUGGCCGG--UUUGGCCA--CUAUGGgug -5'
7198 3' -55.6 NC_001900.1 + 41861 0.66 0.650903
Target:  5'- aCGCUGGCCAAGCuCGaUGAgcuggGCuaCCACg -3'
miRNA:   3'- gGUGGCCGGUUUG-GCcACUa----UG--GGUG- -5'
7198 3' -55.6 NC_001900.1 + 41116 0.7 0.445981
Target:  5'- gCCACCGGCCGcggaguagaugaugAACCGGUuGAcaucgaguccgUACUCGg -3'
miRNA:   3'- -GGUGGCCGGU--------------UUGGCCA-CU-----------AUGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.