miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7212 3' -61.3 NC_001900.1 + 26333 0.66 0.423686
Target:  5'- aUCCGGuugucguaguuccUCGGCCCGAaguACCgcugcccgucgaucgGGCUGAcguACg -3'
miRNA:   3'- gAGGCC-------------AGCCGGGCU---UGG---------------CCGGCU---UG- -5'
7212 3' -61.3 NC_001900.1 + 44941 0.66 0.420954
Target:  5'- -gCCGGUCGGCagaUGAACCaacuGCC-AGCg -3'
miRNA:   3'- gaGGCCAGCCGg--GCUUGGc---CGGcUUG- -5'
7212 3' -61.3 NC_001900.1 + 12718 0.66 0.420954
Target:  5'- --aCGGUgaGGCCgCGAGCCcguuccguucgGGCCGGAUc -3'
miRNA:   3'- gagGCCAg-CCGG-GCUUGG-----------CCGGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 35727 0.66 0.411921
Target:  5'- uCUUCacGUCGGCCUccGCUGGCCGuAGCc -3'
miRNA:   3'- -GAGGc-CAGCCGGGcuUGGCCGGC-UUG- -5'
7212 3' -61.3 NC_001900.1 + 47777 0.66 0.411921
Target:  5'- gUCCaGUCuGGCguCUGGcuGCCGGUCGAACc -3'
miRNA:   3'- gAGGcCAG-CCG--GGCU--UGGCCGGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 34299 0.66 0.411921
Target:  5'- --aCGGUgGGCUCGGAUCaGGUCGAu- -3'
miRNA:   3'- gagGCCAgCCGGGCUUGG-CCGGCUug -5'
7212 3' -61.3 NC_001900.1 + 19867 0.66 0.403009
Target:  5'- gCUCCGaGUCGGgcucCCCGGugUgGGCgCGGAUg -3'
miRNA:   3'- -GAGGC-CAGCC----GGGCUugG-CCG-GCUUG- -5'
7212 3' -61.3 NC_001900.1 + 32530 0.66 0.403009
Target:  5'- gUUCGGUCaGGaCCG-ACCGGCUGGc- -3'
miRNA:   3'- gAGGCCAG-CCgGGCuUGGCCGGCUug -5'
7212 3' -61.3 NC_001900.1 + 39414 0.66 0.397722
Target:  5'- cCUCUGcGUCGuacgcgacacgaauuGCCUuGGCCGGCCGAc- -3'
miRNA:   3'- -GAGGC-CAGC---------------CGGGcUUGGCCGGCUug -5'
7212 3' -61.3 NC_001900.1 + 35631 0.66 0.385558
Target:  5'- -aCCGcGUCGGCCuCGAugucgaucagAUCGGcCCGGAa -3'
miRNA:   3'- gaGGC-CAGCCGG-GCU----------UGGCC-GGCUUg -5'
7212 3' -61.3 NC_001900.1 + 32443 0.66 0.385558
Target:  5'- uUCaGGUCGGCguugaCCGGAacgUCGGCCGAcaGCu -3'
miRNA:   3'- gAGgCCAGCCG-----GGCUU---GGCCGGCU--UG- -5'
7212 3' -61.3 NC_001900.1 + 37182 0.66 0.385557
Target:  5'- -aCUGGUCGGCguacucgaCCaGAGCUGGUgCGAACu -3'
miRNA:   3'- gaGGCCAGCCG--------GG-CUUGGCCG-GCUUG- -5'
7212 3' -61.3 NC_001900.1 + 34611 0.66 0.384698
Target:  5'- uUUCGuGUCGGugcccgcgaagaaCCCGGACggggcgUGGCCGAACu -3'
miRNA:   3'- gAGGC-CAGCC-------------GGGCUUG------GCCGGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 45016 0.66 0.377021
Target:  5'- -cCUGGUCGGCCUucaGAAUCuccucggcgacaGGCCGAuACa -3'
miRNA:   3'- gaGGCCAGCCGGG---CUUGG------------CCGGCU-UG- -5'
7212 3' -61.3 NC_001900.1 + 25738 0.67 0.368613
Target:  5'- -gCCGGuauagaacUCGGCCC-AGCCggGGCCGAc- -3'
miRNA:   3'- gaGGCC--------AGCCGGGcUUGG--CCGGCUug -5'
7212 3' -61.3 NC_001900.1 + 4068 0.67 0.368613
Target:  5'- cCUCgaucaaGGUCGaGUCCGAAgaGGCCGAc- -3'
miRNA:   3'- -GAGg-----CCAGC-CGGGCUUggCCGGCUug -5'
7212 3' -61.3 NC_001900.1 + 8633 0.67 0.360334
Target:  5'- gCUCUGGUCGGCugCCGggUcuccgaCGGCCu-GCu -3'
miRNA:   3'- -GAGGCCAGCCG--GGCuuG------GCCGGcuUG- -5'
7212 3' -61.3 NC_001900.1 + 9250 0.67 0.352185
Target:  5'- uUCCguacgaGGcCGGCCUGAGCaCGGCCa--- -3'
miRNA:   3'- gAGG------CCaGCCGGGCUUG-GCCGGcuug -5'
7212 3' -61.3 NC_001900.1 + 4883 0.67 0.344168
Target:  5'- -aCCGGUaCGGCUCGAcugagagcuuCCGGCuCGAccACa -3'
miRNA:   3'- gaGGCCA-GCCGGGCUu---------GGCCG-GCU--UG- -5'
7212 3' -61.3 NC_001900.1 + 46695 0.67 0.343374
Target:  5'- cCUCCGGUaguucuuGCCgacgcuuCGAGCCGGCCcAACu -3'
miRNA:   3'- -GAGGCCAgc-----CGG-------GCUUGGCCGGcUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.