miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7218 5' -56.8 NC_001900.1 + 14632 0.66 0.666977
Target:  5'- uCCAACGUCGgugaGCCCaacgaGGuCGUCUGCa- -3'
miRNA:   3'- cGGUUGCAGC----UGGG-----CCuGCGGAUGcu -5'
7218 5' -56.8 NC_001900.1 + 1813 0.66 0.663746
Target:  5'- cGCUGAUGUCGAgcgacagcguguucCCCGGAaaGCCgggugACGGc -3'
miRNA:   3'- -CGGUUGCAGCU--------------GGGCCUg-CGGa----UGCU- -5'
7218 5' -56.8 NC_001900.1 + 19264 0.66 0.656198
Target:  5'- aCCAAgGaCGACCCGGAgcggaaguaUGCCaagACGGu -3'
miRNA:   3'- cGGUUgCaGCUGGGCCU---------GCGGa--UGCU- -5'
7218 5' -56.8 NC_001900.1 + 27045 0.66 0.656198
Target:  5'- aGCCGACacgGUUGguacGCCUGGGCGCUgcUGAu -3'
miRNA:   3'- -CGGUUG---CAGC----UGGGCCUGCGGauGCU- -5'
7218 5' -56.8 NC_001900.1 + 7911 0.66 0.656198
Target:  5'- cGCacaaGGCGaUCGACCCGGAgaGCCcggaucCGAa -3'
miRNA:   3'- -CGg---UUGC-AGCUGGGCCUg-CGGau----GCU- -5'
7218 5' -56.8 NC_001900.1 + 15291 0.66 0.645399
Target:  5'- gGCCuguACuaCGGCCCGaACGCCUccACGAc -3'
miRNA:   3'- -CGGu--UGcaGCUGGGCcUGCGGA--UGCU- -5'
7218 5' -56.8 NC_001900.1 + 35771 0.66 0.634587
Target:  5'- cGCCGACGUacuGCuCCaGGuCGuCCUGCGAc -3'
miRNA:   3'- -CGGUUGCAgc-UG-GG-CCuGC-GGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 44694 0.66 0.623773
Target:  5'- cGCCAGgaGUCGaACCUGGAaccggcgGCUUugGAg -3'
miRNA:   3'- -CGGUUg-CAGC-UGGGCCUg------CGGAugCU- -5'
7218 5' -56.8 NC_001900.1 + 15087 0.66 0.623773
Target:  5'- uCCGAccCGUCGACCUGGACuggaGCCacCGGc -3'
miRNA:   3'- cGGUU--GCAGCUGGGCCUG----CGGauGCU- -5'
7218 5' -56.8 NC_001900.1 + 11555 0.66 0.623773
Target:  5'- gGCCGGCGaccCGAcCCCGGugGUCacUGAc -3'
miRNA:   3'- -CGGUUGCa--GCU-GGGCCugCGGauGCU- -5'
7218 5' -56.8 NC_001900.1 + 18766 0.66 0.612967
Target:  5'- gGUCAACG-CGACCgaGGAUGUC-GCGGa -3'
miRNA:   3'- -CGGUUGCaGCUGGg-CCUGCGGaUGCU- -5'
7218 5' -56.8 NC_001900.1 + 22056 0.66 0.612967
Target:  5'- cGCCAuCGUcgCGACgaGGAUGCCUccgucgauaACGAg -3'
miRNA:   3'- -CGGUuGCA--GCUGggCCUGCGGA---------UGCU- -5'
7218 5' -56.8 NC_001900.1 + 32825 0.67 0.602176
Target:  5'- gGCCAGuCGUCGuugcuggccCCCGGugGCUgucaaGCGu -3'
miRNA:   3'- -CGGUU-GCAGCu--------GGGCCugCGGa----UGCu -5'
7218 5' -56.8 NC_001900.1 + 45541 0.67 0.590336
Target:  5'- cGCC-GCGUCGAuggcguCCUGGAUGucaccggccagacCCUGCGGg -3'
miRNA:   3'- -CGGuUGCAGCU------GGGCCUGC-------------GGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 40607 0.67 0.580678
Target:  5'- gGCC-GCGUUGACCUGGuugaggaacuuGCGCCgugACu- -3'
miRNA:   3'- -CGGuUGCAGCUGGGCC-----------UGCGGa--UGcu -5'
7218 5' -56.8 NC_001900.1 + 33064 0.67 0.580678
Target:  5'- -aCAGC-UCGGCCCGGAU-CCUGgGAu -3'
miRNA:   3'- cgGUUGcAGCUGGGCCUGcGGAUgCU- -5'
7218 5' -56.8 NC_001900.1 + 13374 0.67 0.580678
Target:  5'- uCCGGCGUCGGaucccagaUCUGGACGCCa---- -3'
miRNA:   3'- cGGUUGCAGCU--------GGGCCUGCGGaugcu -5'
7218 5' -56.8 NC_001900.1 + 2386 0.67 0.559344
Target:  5'- uGUgGAUGgccaACCUGGACGCCUACa- -3'
miRNA:   3'- -CGgUUGCagc-UGGGCCUGCGGAUGcu -5'
7218 5' -56.8 NC_001900.1 + 27598 0.67 0.559344
Target:  5'- -aCGACGcgcUCGAuCCCGGAUGCa-GCGAu -3'
miRNA:   3'- cgGUUGC---AGCU-GGGCCUGCGgaUGCU- -5'
7218 5' -56.8 NC_001900.1 + 8682 0.67 0.548759
Target:  5'- cGCCAagGCGUacgaggagaugcUGACCCGGcuCGCCgagcACGGg -3'
miRNA:   3'- -CGGU--UGCA------------GCUGGGCCu-GCGGa---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.