miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7234 5' -53.4 NC_001900.1 + 8871 0.69 0.609007
Target:  5'- gAugGGgGGCGGCAuGGUGGUCgaaaUCGCg -3'
miRNA:   3'- gUugCUgCCGCUGUuUCGCUAG----GGCG- -5'
7234 5' -53.4 NC_001900.1 + 42984 0.68 0.686754
Target:  5'- gAGCG-CGuGCGAUgaacucgggGGAGCGAUCCCu- -3'
miRNA:   3'- gUUGCuGC-CGCUG---------UUUCGCUAGGGcg -5'
7234 5' -53.4 NC_001900.1 + 42784 0.68 0.680139
Target:  5'- cCAGCGACGaugucgccgauguucGCGGCugcgcccgcGuCGAUCCCGCc -3'
miRNA:   3'- -GUUGCUGC---------------CGCUGuuu------C-GCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 23290 0.68 0.667969
Target:  5'- gGAUGACGGCGagacgaugaagcuccGCGugcgccgGGGCGcggCCCGCg -3'
miRNA:   3'- gUUGCUGCCGC---------------UGU-------UUCGCua-GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 25805 0.68 0.664643
Target:  5'- cCAGCGAugcCGGUGugGuccugugcguccAGGCGAgCCUGCa -3'
miRNA:   3'- -GUUGCU---GCCGCugU------------UUCGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 20499 0.69 0.642407
Target:  5'- -cACGACGGCGAguGGGCGuggCUgaaGCg -3'
miRNA:   3'- guUGCUGCCGCUguUUCGCua-GGg--CG- -5'
7234 5' -53.4 NC_001900.1 + 13888 0.69 0.635725
Target:  5'- gGGCGGUGGCGuCGGGGCGAacuacucgaaccgauUCCuCGCu -3'
miRNA:   3'- gUUGCUGCCGCuGUUUCGCU---------------AGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 10396 0.69 0.63127
Target:  5'- --cCGA-GGCuGCcuGGCGAUCCCGUa -3'
miRNA:   3'- guuGCUgCCGcUGuuUCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 43330 0.69 0.620133
Target:  5'- cCGGCGuCGGCGGuCAucgagguuGGUGAgCCCGCc -3'
miRNA:   3'- -GUUGCuGCCGCU-GUu-------UCGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 3122 0.68 0.70865
Target:  5'- aAGCGAUGGagcgcgaaGGCGAGGaccgcgaGAUCCuCGCg -3'
miRNA:   3'- gUUGCUGCCg-------CUGUUUCg------CUAGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 31281 0.67 0.719488
Target:  5'- cCAGCGugGGCaGCAucGGCuGAaucgCCUGCa -3'
miRNA:   3'- -GUUGCugCCGcUGUu-UCG-CUa---GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 16665 0.67 0.719488
Target:  5'- --cCGACGcCGACAAGGCcaaggaaGUCCUGCu -3'
miRNA:   3'- guuGCUGCcGCUGUUUCGc------UAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 30982 0.66 0.811626
Target:  5'- gAACGAC-GCGAUGGAcGCGccagCCUGCa -3'
miRNA:   3'- gUUGCUGcCGCUGUUU-CGCua--GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 21918 0.66 0.80201
Target:  5'- aCAACGGCGGaauCGccGCGAUCaccauCGCg -3'
miRNA:   3'- -GUUGCUGCCgcuGUuuCGCUAGg----GCG- -5'
7234 5' -53.4 NC_001900.1 + 22747 0.66 0.782243
Target:  5'- aCAACcgGAUGGaCGcCGAAGCGuggCUCGCg -3'
miRNA:   3'- -GUUG--CUGCC-GCuGUUUCGCua-GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 20833 0.66 0.782243
Target:  5'- -cACGACGcuacCGACGAGGCcg-UCCGCa -3'
miRNA:   3'- guUGCUGCc---GCUGUUUCGcuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 38626 0.67 0.776184
Target:  5'- -cGCGcuCGGCGAUGGAguagcccauguccuuGCGAgCCCGCu -3'
miRNA:   3'- guUGCu-GCCGCUGUUU---------------CGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 43204 0.67 0.772114
Target:  5'- -cACGACGGUGuuGAacAGCgccccgugGAUCUCGCg -3'
miRNA:   3'- guUGCUGCCGCugUU--UCG--------CUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 20684 0.67 0.761838
Target:  5'- --uCGACGGUGACGA-GCa--CCUGCa -3'
miRNA:   3'- guuGCUGCCGCUGUUuCGcuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 31095 0.67 0.751425
Target:  5'- cCAGCGACGGa-GCGAGcuguGCGAUCgCGg -3'
miRNA:   3'- -GUUGCUGCCgcUGUUU----CGCUAGgGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.