miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 39367 0.69 0.850934
Target:  5'- aGCggUGAUGCCGuaggugGCCAGGAUccgGGUCu -3'
miRNA:   3'- -CGuaGCUACGGCua----UGGUUUUG---CCGG- -5'
7249 5' -49.3 NC_001900.1 + 39109 0.66 0.950789
Target:  5'- gGCcUCGAUcGgcgcuaugcgcuccCCGAUgACCuGGACGGCCg -3'
miRNA:   3'- -CGuAGCUA-C--------------GGCUA-UGGuUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 38995 0.69 0.850934
Target:  5'- uGCGUUGGUGaaGuugGCCAGcuCGGCUg -3'
miRNA:   3'- -CGUAGCUACggCua-UGGUUuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 38555 0.72 0.728729
Target:  5'- gGCGUCGAccaucgUGCCcagcagGCCGAGgcccaucGCGGCCu -3'
miRNA:   3'- -CGUAGCU------ACGGcua---UGGUUU-------UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 38021 0.69 0.859664
Target:  5'- cGgGUUGAUaGCCGAUGaucggcUCGAAAUGGUCg -3'
miRNA:   3'- -CgUAGCUA-CGGCUAU------GGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 36602 0.66 0.947479
Target:  5'- uGCAUCGccgcGCCGucgaacGCCAucgcgaAGGCGGUCg -3'
miRNA:   3'- -CGUAGCua--CGGCua----UGGU------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 35639 0.73 0.63923
Target:  5'- gGCcUCGAUGUCGA--UCAGAuCGGCCc -3'
miRNA:   3'- -CGuAGCUACGGCUauGGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 35092 0.69 0.841955
Target:  5'- aCGUCG-UGCCGAcgUACCGGAcUGGUUg -3'
miRNA:   3'- cGUAGCuACGGCU--AUGGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 34969 0.76 0.481347
Target:  5'- -aGUgGGUGUCGAUcaggucgACCAAGGCGGCUg -3'
miRNA:   3'- cgUAgCUACGGCUA-------UGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 33778 0.75 0.548067
Target:  5'- gGCGUCucgGCCGA-ACCGu-GCGGCCa -3'
miRNA:   3'- -CGUAGcuaCGGCUaUGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 32617 0.67 0.918967
Target:  5'- cGCAgccuucuUCGcgGCCacUACCAucGCGGCg -3'
miRNA:   3'- -CGU-------AGCuaCGGcuAUGGUuuUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 32067 0.69 0.850934
Target:  5'- cGCcUUGAUGCCGuccAUGCCGAGuGCGaCCa -3'
miRNA:   3'- -CGuAGCUACGGC---UAUGGUUU-UGCcGG- -5'
7249 5' -49.3 NC_001900.1 + 31391 0.73 0.67359
Target:  5'- aGCAUCG-UGCCGAgggugucgGCCAGcgUGGUg -3'
miRNA:   3'- -CGUAGCuACGGCUa-------UGGUUuuGCCGg -5'
7249 5' -49.3 NC_001900.1 + 31318 0.73 0.63923
Target:  5'- -uGUCGGUGCCGcccguGUACC-GGACGGUg -3'
miRNA:   3'- cgUAGCUACGGC-----UAUGGuUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 30620 0.73 0.627748
Target:  5'- --cUCGAaGCCGuUGCCGAAGCccucGGCCg -3'
miRNA:   3'- cguAGCUaCGGCuAUGGUUUUG----CCGG- -5'
7249 5' -49.3 NC_001900.1 + 30583 0.66 0.956559
Target:  5'- -gGUCGAUgGUCGA--CCAGAucuUGGCCu -3'
miRNA:   3'- cgUAGCUA-CGGCUauGGUUUu--GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 30509 0.68 0.906351
Target:  5'- --cUUGGUGCUGAUACCAgcgaggaucccgGAGgGGUCc -3'
miRNA:   3'- cguAGCUACGGCUAUGGU------------UUUgCCGG- -5'
7249 5' -49.3 NC_001900.1 + 29360 0.78 0.373232
Target:  5'- -gGUCGGUGCCGAUcagcACCGGAcccaucuccuCGGCCa -3'
miRNA:   3'- cgUAGCUACGGCUA----UGGUUUu---------GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 28207 0.66 0.952164
Target:  5'- ---gCGAUGUCGuugGCCucguccuugcGGACGGCCu -3'
miRNA:   3'- cguaGCUACGGCua-UGGu---------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 26277 0.67 0.922108
Target:  5'- cGCAUCGAcagcaccgguagcggUGUCGAacgcGCCuu--CGGCCc -3'
miRNA:   3'- -CGUAGCU---------------ACGGCUa---UGGuuuuGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.