miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 5' -56.6 NC_001900.1 + 49055 0.7 0.37736
Target:  5'- cUCACGGcacgcGUGCCUCGAGGGgCA-CACg -3'
miRNA:   3'- -AGUGCC-----CGUGGAGCUUCCgGUaGUGg -5'
7269 5' -56.6 NC_001900.1 + 47333 0.66 0.620327
Target:  5'- aCGCGGGCaaGCUggaGAAGGUCcgCaaaGCCg -3'
miRNA:   3'- aGUGCCCG--UGGag-CUUCCGGuaG---UGG- -5'
7269 5' -56.6 NC_001900.1 + 46659 0.69 0.413594
Target:  5'- -gACGGGCugACCUuccgUGAGGcugcccaccaaGCCAUCGCCa -3'
miRNA:   3'- agUGCCCG--UGGA----GCUUC-----------CGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 45664 0.67 0.576694
Target:  5'- uUCACGGcGCACaCgcucaCGGccGGCCGgccUCACCa -3'
miRNA:   3'- -AGUGCC-CGUG-Ga----GCUu-CCGGU---AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 43599 0.66 0.642241
Target:  5'- aCGCGGuGCAUC-CGcAGGaCCGcCGCCg -3'
miRNA:   3'- aGUGCC-CGUGGaGCuUCC-GGUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 43047 0.67 0.544413
Target:  5'- cCGCGaGGCuucgcgucccCCUCGAcggAGGCgGUCACa -3'
miRNA:   3'- aGUGC-CCGu---------GGAGCU---UCCGgUAGUGg -5'
7269 5' -56.6 NC_001900.1 + 41081 0.66 0.598454
Target:  5'- gUUGCGGGCcaggccggugACCUCGc-GGCCGUgGaCCu -3'
miRNA:   3'- -AGUGCCCG----------UGGAGCuuCCGGUAgU-GG- -5'
7269 5' -56.6 NC_001900.1 + 40779 0.67 0.555115
Target:  5'- cUugGGggauGCGCCagGAAGGCUucaacGUCACCc -3'
miRNA:   3'- aGugCC----CGUGGagCUUCCGG-----UAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 40473 0.66 0.609381
Target:  5'- gCACGGGC-UCUCGGugAGcGCCAagGCg -3'
miRNA:   3'- aGUGCCCGuGGAGCU--UC-CGGUagUGg -5'
7269 5' -56.6 NC_001900.1 + 40276 0.67 0.555115
Target:  5'- aCGCGGGUcauguCCUCGAccguguGGCCgGUCGgCa -3'
miRNA:   3'- aGUGCCCGu----GGAGCUu-----CCGG-UAGUgG- -5'
7269 5' -56.6 NC_001900.1 + 40010 0.71 0.319285
Target:  5'- cUCGCaGGUgcaugGCCUCGua-GCCGUCGCCg -3'
miRNA:   3'- -AGUGcCCG-----UGGAGCuucCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 39313 0.74 0.218091
Target:  5'- -gACGGGCAUCguUCGAGGGCUGcUCugCa -3'
miRNA:   3'- agUGCCCGUGG--AGCUUCCGGU-AGugG- -5'
7269 5' -56.6 NC_001900.1 + 39130 0.67 0.565878
Target:  5'- cCACcGGCAUCgCGGAGGUCAUCcaGCg -3'
miRNA:   3'- aGUGcCCGUGGaGCUUCCGGUAG--UGg -5'
7269 5' -56.6 NC_001900.1 + 34809 0.69 0.412662
Target:  5'- uUCGCGGGCACaccggcucaggauCUCGGAgaccucGGUCAgcaucuUCGCCa -3'
miRNA:   3'- -AGUGCCCGUG-------------GAGCUU------CCGGU------AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 34413 0.71 0.335169
Target:  5'- aCACGGGUuggugcagacgACCUCGuuGGGC--UCACCg -3'
miRNA:   3'- aGUGCCCG-----------UGGAGCu-UCCGguAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 34255 0.71 0.351623
Target:  5'- --uUGGGCACCUCGGAguGGCCuccuauuUgGCCc -3'
miRNA:   3'- aguGCCCGUGGAGCUU--CCGGu------AgUGG- -5'
7269 5' -56.6 NC_001900.1 + 34206 0.67 0.565878
Target:  5'- uUCGCaGGCACC-CGGAGacaaGCgGuUCACCg -3'
miRNA:   3'- -AGUGcCCGUGGaGCUUC----CGgU-AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 33876 0.69 0.432496
Target:  5'- aCGaaGGaCACCUUGGucgAGGCCGUgGCCg -3'
miRNA:   3'- aGUgcCC-GUGGAGCU---UCCGGUAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 33729 0.66 0.638955
Target:  5'- uUCACGgccaacgucgacccGGaCGCCUaCGAGGGCguggaUGUCGCCg -3'
miRNA:   3'- -AGUGC--------------CC-GUGGA-GCUUCCG-----GUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 33583 0.67 0.576694
Target:  5'- gUACGaGGCugCUgCGAucaaaGCCGUCGCUg -3'
miRNA:   3'- aGUGC-CCGugGA-GCUuc---CGGUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.