miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7271 5' -57.6 NC_001900.1 + 48478 0.67 0.490014
Target:  5'- aCCAcGGCCGGgUaGCugUcaAGCCCGAAUu -3'
miRNA:   3'- aGGU-CCGGCUgA-CGugG--UUGGGCUUA- -5'
7271 5' -57.6 NC_001900.1 + 44709 0.67 0.459542
Target:  5'- gCCAGGCCGcuggccGCUGCcacACCuugucGAUCCGAGc -3'
miRNA:   3'- aGGUCCGGC------UGACG---UGG-----UUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 44485 0.79 0.078926
Target:  5'- cUCCAGGCCGACggUGUACCGgcGCUCGAu- -3'
miRNA:   3'- -AGGUCCGGCUG--ACGUGGU--UGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 43181 0.69 0.357363
Target:  5'- cUCUGGGCUGGCUGCugaACCGGCCaGGc- -3'
miRNA:   3'- -AGGUCCGGCUGACG---UGGUUGGgCUua -5'
7271 5' -57.6 NC_001900.1 + 42774 0.72 0.221091
Target:  5'- aCCAGGUCGuGCcagGCGuCCAGCCCGAc- -3'
miRNA:   3'- aGGUCCGGC-UGa--CGU-GGUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 41966 0.68 0.430106
Target:  5'- gUCCGGGCCGAa-GCcguCCGACUCGcGAUg -3'
miRNA:   3'- -AGGUCCGGCUgaCGu--GGUUGGGC-UUA- -5'
7271 5' -57.6 NC_001900.1 + 41615 0.72 0.239231
Target:  5'- gUCGGGCuCGAUggaGCACCGACCCuGGAUc -3'
miRNA:   3'- aGGUCCG-GCUGa--CGUGGUUGGG-CUUA- -5'
7271 5' -57.6 NC_001900.1 + 41164 0.66 0.510843
Target:  5'- gUCCAcGGCCGcagGuCACCGGCCUGGc- -3'
miRNA:   3'- -AGGU-CCGGCugaC-GUGGUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 40869 0.66 0.532031
Target:  5'- cCCuGGCUGacgaGCUGCACCGGucCCCGuAUg -3'
miRNA:   3'- aGGuCCGGC----UGACGUGGUU--GGGCuUA- -5'
7271 5' -57.6 NC_001900.1 + 38730 0.66 0.532031
Target:  5'- cCCAGGCCGAacgGUagaACCugaugAACCUGAAg -3'
miRNA:   3'- aGGUCCGGCUga-CG---UGG-----UUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 38440 0.7 0.316483
Target:  5'- aUCCuGGCUGACgGCgACgAGCCCGGu- -3'
miRNA:   3'- -AGGuCCGGCUGaCG-UGgUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 37423 0.67 0.439796
Target:  5'- gUCGGGCUGGgUGuCGCCGaugaACCCGAc- -3'
miRNA:   3'- aGGUCCGGCUgAC-GUGGU----UGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 35928 0.66 0.542745
Target:  5'- gCCuGGCuCGGagaUGUACCGAgCCGAGg -3'
miRNA:   3'- aGGuCCG-GCUg--ACGUGGUUgGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 34989 0.66 0.521396
Target:  5'- aCCaAGG-CGGCUGC-CCAGCCCu--- -3'
miRNA:   3'- aGG-UCCgGCUGACGuGGUUGGGcuua -5'
7271 5' -57.6 NC_001900.1 + 34486 0.78 0.091118
Target:  5'- aCgAGGUCGuCUGCACCAACCCGuGUg -3'
miRNA:   3'- aGgUCCGGCuGACGUGGUUGGGCuUA- -5'
7271 5' -57.6 NC_001900.1 + 34388 0.67 0.449609
Target:  5'- gCCGGGaagaCCGACUaCAUCGACCUGAu- -3'
miRNA:   3'- aGGUCC----GGCUGAcGUGGUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 33187 0.68 0.383612
Target:  5'- aCCAagauGGCCGAUcacuCGCCAACCUGggUg -3'
miRNA:   3'- aGGU----CCGGCUGac--GUGGUUGGGCuuA- -5'
7271 5' -57.6 NC_001900.1 + 30698 0.66 0.521396
Target:  5'- cUCCAgcgaguGGCCGAaccCACCGGcCCCGAAa -3'
miRNA:   3'- -AGGU------CCGGCUgacGUGGUU-GGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 30113 0.69 0.335654
Target:  5'- gUCCAGGaacgucuggacccaCGACgUGCGCCAcuuCCCGAGc -3'
miRNA:   3'- -AGGUCCg-------------GCUG-ACGUGGUu--GGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 29431 0.75 0.135406
Target:  5'- gUCCGGuGCUGAUcgGCACCGAcCCCGAAg -3'
miRNA:   3'- -AGGUC-CGGCUGa-CGUGGUU-GGGCUUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.