miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7272 5' -57.2 NC_001900.1 + 31906 0.66 0.632706
Target:  5'- aACCGCuCG-GucuCCUCG--GCGGUCAUGu -3'
miRNA:   3'- -UGGCG-GCgCu--GGAGCuuUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 32540 0.66 0.632706
Target:  5'- gACCGaCCGgcUGGCCUCGAuguagAAC-GUCGCGc -3'
miRNA:   3'- -UGGC-GGC--GCUGGAGCU-----UUGcCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 44668 0.66 0.621886
Target:  5'- gACCGCCucgGCGACagcgUGGAacGCGGUCcccuGCGg -3'
miRNA:   3'- -UGGCGG---CGCUGga--GCUU--UGCCAG----UGC- -5'
7272 5' -57.2 NC_001900.1 + 33311 0.66 0.611074
Target:  5'- cGCagGCCGC-ACCUCc--ACGGUCugGg -3'
miRNA:   3'- -UGg-CGGCGcUGGAGcuuUGCCAGugC- -5'
7272 5' -57.2 NC_001900.1 + 1184 0.66 0.611074
Target:  5'- aGCCGCCggaaGCGGCC--GggGCGGUUuagGCa -3'
miRNA:   3'- -UGGCGG----CGCUGGagCuuUGCCAG---UGc -5'
7272 5' -57.2 NC_001900.1 + 7904 0.66 0.60028
Target:  5'- gACgGCCGCGACggUGAuccacgcuGCGGggCGCGg -3'
miRNA:   3'- -UGgCGGCGCUGgaGCUu-------UGCCa-GUGC- -5'
7272 5' -57.2 NC_001900.1 + 3284 0.66 0.597046
Target:  5'- cACCgGCCGCGACUuccgcuggUCGAucccccaccucgaccCGGUCACc -3'
miRNA:   3'- -UGG-CGGCGCUGG--------AGCUuu-------------GCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 3536 0.66 0.589512
Target:  5'- cAUCGaCGCGGCgCUCGggGcCGGUaACGg -3'
miRNA:   3'- -UGGCgGCGCUG-GAGCuuU-GCCAgUGC- -5'
7272 5' -57.2 NC_001900.1 + 36703 0.66 0.578779
Target:  5'- uCCGCCGCGACCgugCGuucuuguGCaGG-UACGg -3'
miRNA:   3'- uGGCGGCGCUGGa--GCuu-----UG-CCaGUGC- -5'
7272 5' -57.2 NC_001900.1 + 27600 0.66 0.578779
Target:  5'- gACCGCCGacuuCCUCGGcgugagcaccaaGACGGUgCGCc -3'
miRNA:   3'- -UGGCGGCgcu-GGAGCU------------UUGCCA-GUGc -5'
7272 5' -57.2 NC_001900.1 + 26480 0.67 0.568088
Target:  5'- gAUCGCUGCgGACCcagCGcAGCGGUCGa- -3'
miRNA:   3'- -UGGCGGCG-CUGGa--GCuUUGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 30293 0.67 0.568088
Target:  5'- cGCCuCCGCGACaUCcu--CGGUCGCGu -3'
miRNA:   3'- -UGGcGGCGCUGgAGcuuuGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 21249 0.67 0.568088
Target:  5'- aGCCaGCuCGcCGugCUCGgcGCGGUCGg- -3'
miRNA:   3'- -UGG-CG-GC-GCugGAGCuuUGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 46208 0.67 0.568088
Target:  5'- gGCuCGCCGauACCUucguauucuugcCGucGCGGUCACGg -3'
miRNA:   3'- -UG-GCGGCgcUGGA------------GCuuUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 4151 0.67 0.5353
Target:  5'- cUUGUCGgccucuucggacuCGACCuugaUCGAGGCGGUCACGc -3'
miRNA:   3'- uGGCGGC-------------GCUGG----AGCUUUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 22155 0.68 0.505247
Target:  5'- -gUGCCGCuGGCCUCGGAAggcCGG-CugGa -3'
miRNA:   3'- ugGCGGCG-CUGGAGCUUU---GCCaGugC- -5'
7272 5' -57.2 NC_001900.1 + 31750 0.68 0.505246
Target:  5'- gACCGCaGUGACCaaccgaccguUCGcgGCGGUCAgGu -3'
miRNA:   3'- -UGGCGgCGCUGG----------AGCuuUGCCAGUgC- -5'
7272 5' -57.2 NC_001900.1 + 13719 0.68 0.505246
Target:  5'- cGCCGCgaugUGCGACCaCGAAGCGGaUCcucCGg -3'
miRNA:   3'- -UGGCG----GCGCUGGaGCUUUGCC-AGu--GC- -5'
7272 5' -57.2 NC_001900.1 + 6726 0.68 0.505246
Target:  5'- cCCGCUGCGGCCUuccCGAuguggccguCGGUCGa- -3'
miRNA:   3'- uGGCGGCGCUGGA---GCUuu-------GCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 12425 0.68 0.495051
Target:  5'- gAUCGUCGCGAUCUUGuggggcgcGAUGGUCuGCGa -3'
miRNA:   3'- -UGGCGGCGCUGGAGCu-------UUGCCAG-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.