Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7272 | 5' | -57.2 | NC_001900.1 | + | 7904 | 0.66 | 0.60028 |
Target: 5'- gACgGCCGCGACggUGAuccacgcuGCGGggCGCGg -3' miRNA: 3'- -UGgCGGCGCUGgaGCUu-------UGCCa-GUGC- -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 26943 | 0.69 | 0.426579 |
Target: 5'- gGCCGuuGCGACCUUaaguGCGaccuuGUCACGu -3' miRNA: 3'- -UGGCggCGCUGGAGcuu-UGC-----CAGUGC- -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 26254 | 0.69 | 0.426579 |
Target: 5'- gAUCGCCGagcgaGACCUCGcuGGCGG-CACc -3' miRNA: 3'- -UGGCGGCg----CUGGAGCu-UUGCCaGUGc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 24579 | 0.69 | 0.420973 |
Target: 5'- gACCGCCGUGACCggagucagcaccgggUCGAAcGCuGGcCACa -3' miRNA: 3'- -UGGCGGCGCUGG---------------AGCUU-UG-CCaGUGc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 22660 | 0.72 | 0.293444 |
Target: 5'- cACCGCCGcCGAUCUCGAAuGCGccGUCAg- -3' miRNA: 3'- -UGGCGGC-GCUGGAGCUU-UGC--CAGUgc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 31831 | 0.72 | 0.293444 |
Target: 5'- gACCGCCGCGAacggUCGGu-UGGUCACu -3' miRNA: 3'- -UGGCGGCGCUgg--AGCUuuGCCAGUGc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 14291 | 0.73 | 0.265668 |
Target: 5'- uGCCugGCCGCGACCUUGuucGCGuUCGCGu -3' miRNA: 3'- -UGG--CGGCGCUGGAGCuu-UGCcAGUGC- -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 12533 | 0.74 | 0.227459 |
Target: 5'- cAUCGCCGCG-CCgUCGAAcgccaucgcgaagGCGGUCGCc -3' miRNA: 3'- -UGGCGGCGCuGG-AGCUU-------------UGCCAGUGc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 43052 | 0.78 | 0.113176 |
Target: 5'- gACgGCCGCGAggcuucgcgucccCCUCGAcggaGGCGGUCACa -3' miRNA: 3'- -UGgCGGCGCU-------------GGAGCU----UUGCCAGUGc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 41401 | 0.69 | 0.445582 |
Target: 5'- aACCGCCcUGGCUUaaaCGAcaAACGGUCAUGu -3' miRNA: 3'- -UGGCGGcGCUGGA---GCU--UUGCCAGUGC- -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 36789 | 0.69 | 0.445582 |
Target: 5'- aGCUGCCGU-ACCUgcacaaGAAcgcACGGUCGCGg -3' miRNA: 3'- -UGGCGGCGcUGGAg-----CUU---UGCCAGUGC- -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 27600 | 0.66 | 0.578779 |
Target: 5'- gACCGCCGacuuCCUCGGcgugagcaccaaGACGGUgCGCc -3' miRNA: 3'- -UGGCGGCgcu-GGAGCU------------UUGCCA-GUGc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 26480 | 0.67 | 0.568088 |
Target: 5'- gAUCGCUGCgGACCcagCGcAGCGGUCGa- -3' miRNA: 3'- -UGGCGGCG-CUGGa--GCuUUGCCAGUgc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 4151 | 0.67 | 0.5353 |
Target: 5'- cUUGUCGgccucuucggacuCGACCuugaUCGAGGCGGUCACGc -3' miRNA: 3'- uGGCGGC-------------GCUGG----AGCUUUGCCAGUGC- -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 22155 | 0.68 | 0.505247 |
Target: 5'- -gUGCCGCuGGCCUCGGAAggcCGG-CugGa -3' miRNA: 3'- ugGCGGCG-CUGGAGCUUU---GCCaGugC- -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 12425 | 0.68 | 0.495051 |
Target: 5'- gAUCGUCGCGAUCUUGuggggcgcGAUGGUCuGCGa -3' miRNA: 3'- -UGGCGGCGCUGGAGCu-------UUGCCAG-UGC- -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 5777 | 0.68 | 0.473952 |
Target: 5'- cCCGCCGUugauccggcgcguGACCguuUCGAGgucgcgGCGGUCGCu -3' miRNA: 3'- uGGCGGCG-------------CUGG---AGCUU------UGCCAGUGc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 2336 | 0.69 | 0.455259 |
Target: 5'- uGCuCGUCGCuGACCUCGAccuGGCcGUCACc -3' miRNA: 3'- -UG-GCGGCG-CUGGAGCU---UUGcCAGUGc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 13077 | 0.69 | 0.445582 |
Target: 5'- cGCCGCCGCuGACCaCGu--UGGUCAg- -3' miRNA: 3'- -UGGCGGCG-CUGGaGCuuuGCCAGUgc -5' |
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7272 | 5' | -57.2 | NC_001900.1 | + | 31906 | 0.66 | 0.632706 |
Target: 5'- aACCGCuCG-GucuCCUCG--GCGGUCAUGu -3' miRNA: 3'- -UGGCG-GCgCu--GGAGCuuUGCCAGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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