miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7338 5' -54.7 NC_001900.1 + 17228 0.65 0.752079
Target:  5'- --aGCGaACACCAagcucgcCCGAGAc-CUCGGGg -3'
miRNA:   3'- cgaCGC-UGUGGU-------GGCUCUucGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 13114 0.65 0.749993
Target:  5'- gGCUgcGCGACgaguaccucuacgaGCCGCCGAucccGGAGUUCcuGGGa -3'
miRNA:   3'- -CGA--CGCUG--------------UGGUGGCU----CUUCGAG--UCC- -5'
7338 5' -54.7 NC_001900.1 + 8330 0.66 0.742655
Target:  5'- --cGgGAgGgCAUCGAGAAGCUCcgcgAGGg -3'
miRNA:   3'- cgaCgCUgUgGUGGCUCUUCGAG----UCC- -5'
7338 5' -54.7 NC_001900.1 + 47974 0.66 0.732077
Target:  5'- uGCcGCGAUACCA-----AAGCUCAGGu -3'
miRNA:   3'- -CGaCGCUGUGGUggcucUUCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 44723 0.66 0.732077
Target:  5'- cGCUGCcACACCuugucgauCCGAGcGAGCuuguacgccaUCGGGc -3'
miRNA:   3'- -CGACGcUGUGGu-------GGCUC-UUCG----------AGUCC- -5'
7338 5' -54.7 NC_001900.1 + 39287 0.66 0.721397
Target:  5'- --aGCGGgACCACCGGGAccgcgccgAGCccgUGGGg -3'
miRNA:   3'- cgaCGCUgUGGUGGCUCU--------UCGa--GUCC- -5'
7338 5' -54.7 NC_001900.1 + 27574 0.66 0.717099
Target:  5'- gGCUGCGAUgGCCgcgaacGCCGAGAGGgugaacgccuucaUCGGGc -3'
miRNA:   3'- -CGACGCUG-UGG------UGGCUCUUCg------------AGUCC- -5'
7338 5' -54.7 NC_001900.1 + 22015 0.67 0.688864
Target:  5'- aGCgcccagGCG-UACCaACCGuGucGGCUCAGGg -3'
miRNA:   3'- -CGa-----CGCuGUGG-UGGCuCu-UCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 20377 0.67 0.688864
Target:  5'- aGCUGCccugguACAUCGCCGAGGAGggCAu- -3'
miRNA:   3'- -CGACGc-----UGUGGUGGCUCUUCgaGUcc -5'
7338 5' -54.7 NC_001900.1 + 24252 0.67 0.677894
Target:  5'- gGCaGCGAugagcgugcCACCGcCCGAGAagguGGCUguGGu -3'
miRNA:   3'- -CGaCGCU---------GUGGU-GGCUCU----UCGAguCC- -5'
7338 5' -54.7 NC_001900.1 + 48356 0.67 0.664673
Target:  5'- cGCUGCGGCccguggcaugucCCGCC-AGAGGCugaaaUCGGGc -3'
miRNA:   3'- -CGACGCUGu-----------GGUGGcUCUUCG-----AGUCC- -5'
7338 5' -54.7 NC_001900.1 + 28036 0.67 0.655833
Target:  5'- gGgUGCGGagcCGCCACCGucacaggccguGAGGCcCAGGg -3'
miRNA:   3'- -CgACGCU---GUGGUGGCu----------CUUCGaGUCC- -5'
7338 5' -54.7 NC_001900.1 + 11732 0.67 0.655833
Target:  5'- uGCUcGCGACACucgaauCACCGAGcuggagaacGAGCUgggaCAGGc -3'
miRNA:   3'- -CGA-CGCUGUG------GUGGCUC---------UUCGA----GUCC- -5'
7338 5' -54.7 NC_001900.1 + 14826 0.67 0.655833
Target:  5'- --aGCGGuCGCUgauccgaagaGCCGAGAGGUUCuGGa -3'
miRNA:   3'- cgaCGCU-GUGG----------UGGCUCUUCGAGuCC- -5'
7338 5' -54.7 NC_001900.1 + 20829 0.67 0.655833
Target:  5'- aCUGCacGACGCUACCGAcGAGGCcguccgcaAGGa -3'
miRNA:   3'- cGACG--CUGUGGUGGCU-CUUCGag------UCC- -5'
7338 5' -54.7 NC_001900.1 + 33536 0.67 0.654727
Target:  5'- uGCUGCuugguGAUucgcucguagggaGCCugCGGGAAGCUCuccuccGGGa -3'
miRNA:   3'- -CGACG-----CUG-------------UGGugGCUCUUCGAG------UCC- -5'
7338 5' -54.7 NC_001900.1 + 47531 0.68 0.633684
Target:  5'- -gUGCGGuggacCACCugCGccuGGCUCAGGa -3'
miRNA:   3'- cgACGCU-----GUGGugGCucuUCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 32891 0.68 0.622601
Target:  5'- aCUGCGcgggGCACUGCucguugCGAGGAGCggugCAGGa -3'
miRNA:   3'- cGACGC----UGUGGUG------GCUCUUCGa---GUCC- -5'
7338 5' -54.7 NC_001900.1 + 23500 0.68 0.622601
Target:  5'- cGCUcgucGuCGGCACCAuccCCGGuGAGGCUgCAGGc -3'
miRNA:   3'- -CGA----C-GCUGUGGU---GGCU-CUUCGA-GUCC- -5'
7338 5' -54.7 NC_001900.1 + 20744 0.68 0.611527
Target:  5'- aGCUGUGGCucggcucauuCCACCGGGAg---CAGGa -3'
miRNA:   3'- -CGACGCUGu---------GGUGGCUCUucgaGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.