Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7347 | 3' | -55.3 | NC_001900.1 | + | 48694 | 0.69 | 0.504184 |
Target: 5'- -uGUCGCUGuCGUcGCCGggUgGCUGUc -3' miRNA: 3'- acUAGUGGCuGCA-CGGCuuGgCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 46985 | 0.66 | 0.667211 |
Target: 5'- --uUCugUG-CGUGCagguaGACCGCUGCg -3' miRNA: 3'- acuAGugGCuGCACGgc---UUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 46133 | 0.66 | 0.698883 |
Target: 5'- -cAUCGCCGAgcUG-GUCGAugaccagGCCGUUGCg -3' miRNA: 3'- acUAGUGGCU--GCaCGGCU-------UGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 45609 | 0.72 | 0.343793 |
Target: 5'- cGAUgGCCGGgGUGUCGGuGCCGUUGa -3' miRNA: 3'- aCUAgUGGCUgCACGGCU-UGGCGACg -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 44921 | 0.66 | 0.699966 |
Target: 5'- gGGUCACCGcCG-GCCGcuUCGCcggucgGCa -3' miRNA: 3'- aCUAGUGGCuGCaCGGCuuGGCGa-----CG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 44711 | 0.67 | 0.623121 |
Target: 5'- gGA--ACCGGCG-GCUuuggaGACCGCUGCu -3' miRNA: 3'- aCUagUGGCUGCaCGGc----UUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 44694 | 0.69 | 0.504184 |
Target: 5'- cGGUCcCCuGCGgcagccagGCCGcuGGCCGCUGCc -3' miRNA: 3'- aCUAGuGGcUGCa-------CGGC--UUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 44406 | 0.66 | 0.72149 |
Target: 5'- cGAUCGCUGGCGUaCCGu-CCGggGUc -3' miRNA: 3'- aCUAGUGGCUGCAcGGCuuGGCgaCG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 43480 | 0.66 | 0.710767 |
Target: 5'- gGAUCgGCCGGCcaGCuCGGugcGCCGcCUGCu -3' miRNA: 3'- aCUAG-UGGCUGcaCG-GCU---UGGC-GACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 42775 | 0.66 | 0.689099 |
Target: 5'- uUGAgagCGCCagcgacGAUGUcGCCGAuguucGCgGCUGCg -3' miRNA: 3'- -ACUa--GUGG------CUGCA-CGGCU-----UGgCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 42736 | 0.66 | 0.699966 |
Target: 5'- uUGA-CAgCGGcCGUgGCCGGugCgGCUGCg -3' miRNA: 3'- -ACUaGUgGCU-GCA-CGGCUugG-CGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 41221 | 0.67 | 0.623121 |
Target: 5'- cUGGUCcugGCUGACG-GCCGcGACggugauccaCGCUGCg -3' miRNA: 3'- -ACUAG---UGGCUGCaCGGC-UUG---------GCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 40280 | 0.7 | 0.442465 |
Target: 5'- gGGUCAuguccUCGAcCGUGUggccggucggcagUGAGCCGCUGCg -3' miRNA: 3'- aCUAGU-----GGCU-GCACG-------------GCUUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 40119 | 0.69 | 0.487611 |
Target: 5'- gGGUUGCCGuCGUGCCagaccucgccuucgaGGACCGCguccuccagGCg -3' miRNA: 3'- aCUAGUGGCuGCACGG---------------CUUGGCGa--------CG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 38605 | 0.67 | 0.634157 |
Target: 5'- -cGUCGuCCaGACGgcgauaCCGGAUCGCUGCa -3' miRNA: 3'- acUAGU-GG-CUGCac----GGCUUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 38437 | 0.69 | 0.525233 |
Target: 5'- gUGAUCA-CGGC---CUGGGCCGCUGCa -3' miRNA: 3'- -ACUAGUgGCUGcacGGCUUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 37400 | 0.66 | 0.720422 |
Target: 5'- aGGUCGCCGAUGUGgaCG-ACCucgucggGCUGg -3' miRNA: 3'- aCUAGUGGCUGCACg-GCuUGG-------CGACg -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 37085 | 0.66 | 0.667211 |
Target: 5'- gGGUCACCGuugaGCGgcaguuccUGCCGAccACCGaaGCc -3' miRNA: 3'- aCUAGUGGC----UGC--------ACGGCU--UGGCgaCG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 37004 | 1.13 | 0.000508 |
Target: 5'- aUGAUCACCGACGUGCCGAACCGCUGCa -3' miRNA: 3'- -ACUAGUGGCUGCACGGCUUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 34835 | 0.73 | 0.296637 |
Target: 5'- gGA-CAUCGACGUGCCuGGCCGCg-- -3' miRNA: 3'- aCUaGUGGCUGCACGGcUUGGCGacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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