miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7348 3' -51.4 NC_001900.1 + 28010 0.65 0.906205
Target:  5'- aUCACGCCGuucgggccgguguAACCGggugCGGAG-CCGc- -3'
miRNA:   3'- -AGUGCGGCu------------UUGGCa---GCUUCaGGUuc -5'
7348 3' -51.4 NC_001900.1 + 15825 0.66 0.894932
Target:  5'- cCGCGCCGugGCUGgugcCGAAGUacgCCAGc -3'
miRNA:   3'- aGUGCGGCuuUGGCa---GCUUCA---GGUUc -5'
7348 3' -51.4 NC_001900.1 + 25252 0.66 0.871881
Target:  5'- -aGCGCCGAuAGCCGacCGGAGcCCGu- -3'
miRNA:   3'- agUGCGGCU-UUGGCa-GCUUCaGGUuc -5'
7348 3' -51.4 NC_001900.1 + 21630 0.66 0.879835
Target:  5'- cCGCGUCGAAcgugacuCCGUCGAGGcgCUGAu -3'
miRNA:   3'- aGUGCGGCUUu------GGCAGCUUCa-GGUUc -5'
7348 3' -51.4 NC_001900.1 + 10969 0.66 0.894932
Target:  5'- -aACGCCGAGGCaagaCGuacGUCCAGGa -3'
miRNA:   3'- agUGCGGCUUUGgca-GCuu-CAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 17470 0.66 0.901362
Target:  5'- ---gGCCGAAccgccagaagcucACCGagcgUGAGGUCCGGGa -3'
miRNA:   3'- agugCGGCUU-------------UGGCa---GCUUCAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 25391 0.66 0.902063
Target:  5'- -aACGCCG-AGCCGaCGAAGUggUCAGa -3'
miRNA:   3'- agUGCGGCuUUGGCaGCUUCA--GGUUc -5'
7348 3' -51.4 NC_001900.1 + 18950 0.66 0.871881
Target:  5'- gCGCuGUCGAucagGACCG-CGAGGaaUCCAAGa -3'
miRNA:   3'- aGUG-CGGCU----UUGGCaGCUUC--AGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 45888 0.66 0.871881
Target:  5'- -gACGCUGAAG-CGUCG-GGUCCGc- -3'
miRNA:   3'- agUGCGGCUUUgGCAGCuUCAGGUuc -5'
7348 3' -51.4 NC_001900.1 + 31517 0.66 0.887521
Target:  5'- uUCACGCCGuAGuuGUCGGcgAGaUCCu-- -3'
miRNA:   3'- -AGUGCGGCuUUggCAGCU--UC-AGGuuc -5'
7348 3' -51.4 NC_001900.1 + 15055 0.66 0.887521
Target:  5'- aUACGCCGGccgaacugaaGACCaUCGAccuGUCCGAc -3'
miRNA:   3'- aGUGCGGCU----------UUGGcAGCUu--CAGGUUc -5'
7348 3' -51.4 NC_001900.1 + 11871 0.66 0.894932
Target:  5'- -gACGCCGAcucGAUCGcCGA-GUCCGc- -3'
miRNA:   3'- agUGCGGCU---UUGGCaGCUuCAGGUuc -5'
7348 3' -51.4 NC_001900.1 + 14230 0.66 0.902063
Target:  5'- gUCGCgGCC-AGGCaCGUCGAuGUCCGc- -3'
miRNA:   3'- -AGUG-CGGcUUUG-GCAGCUuCAGGUuc -5'
7348 3' -51.4 NC_001900.1 + 48237 0.67 0.846477
Target:  5'- aUCcCGUCGAAGCagaaGUCGAAcguGUCUggGg -3'
miRNA:   3'- -AGuGCGGCUUUGg---CAGCUU---CAGGuuC- -5'
7348 3' -51.4 NC_001900.1 + 43403 0.67 0.863664
Target:  5'- --uCGCUGAGugCGUUGAuGUCUggGc -3'
miRNA:   3'- aguGCGGCUUugGCAGCUuCAGGuuC- -5'
7348 3' -51.4 NC_001900.1 + 2092 0.67 0.855193
Target:  5'- gCACGCacaGAAGCUGUCGAAccuGUCg--- -3'
miRNA:   3'- aGUGCGg--CUUUGGCAGCUU---CAGguuc -5'
7348 3' -51.4 NC_001900.1 + 12743 0.67 0.863664
Target:  5'- uUCGgGCCG-GAUCGUCGcccGUCCGAc -3'
miRNA:   3'- -AGUgCGGCuUUGGCAGCuu-CAGGUUc -5'
7348 3' -51.4 NC_001900.1 + 23845 0.67 0.846477
Target:  5'- -gGCGCUGggGCUGg-GAAGgCCAGGc -3'
miRNA:   3'- agUGCGGCuuUGGCagCUUCaGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 8776 0.67 0.846477
Target:  5'- cCGCGCCGA---CGUgaaGGAGUUCGAGg -3'
miRNA:   3'- aGUGCGGCUuugGCAg--CUUCAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 30852 0.67 0.846477
Target:  5'- aUCuuGCCGggGagcuguCCGaCGAAGUCgGAGa -3'
miRNA:   3'- -AGugCGGCuuU------GGCaGCUUCAGgUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.